Pseudomonas plecoglossicida: RK21_05652
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Entry
RK21_05652 CDS
T03646
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RK21_05652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppj03019
]
RK21_05652
03016 Transfer RNA biogenesis [BR:
ppj03016
]
RK21_05652
Enzymes [BR:
ppj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RK21_05652
Messenger RNA biogenesis [BR:
ppj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RK21_05652
Transfer RNA biogenesis [BR:
ppj03016
]
Prokaryotic type
tRNA degradation factors
RK21_05652
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
CSD
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AJG17160
UniProt:
A0A0B5KL92
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All DBs
Position
5972054..5974630
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AA seq
858 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAAEFGLYDEDQIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPSQMR
LVFDGDRGLARVSGVDRRGRREGVLVEIISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV
LVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHV
WPKDVIKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSG
GWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKAVVPD
LKNLYNLYKVLVEARHTRGAIDFETQETRIIFGDERKIAEIRPTVRNDAHKLIEECMLAA
NVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLTLHKGKDPSPKDYQALLASI
AGRPDFHLIQTVMLRSLSQAVYSTDNNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSII
RSRVETPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFM
KDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLSGERTGRS
FRLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPAAGQAEQAPVEAKATPK
PRSRKSETAEAYFPKDAVQRNAEVRKSREMKKALMSEARSGGHASSKSDKGGKASGKPTK
HRKGPSKSGAPRKSKSKS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgctcgcgaagcggaaaaatacgacaac
cctattcccagccgtgagctgatcctgcagcgcctcgccgaccgtggcgaaccggccgca
cgcgaggagctggcggccgagttcggtctgtacgacgaagatcagatcgaagccctgcgc
cgccgcctgcgtgcaatggagcgcgatggccagcttatctatacccggcgcggcacttat
gccccggtagacaagctggacctgatctgcggccgcgtctccggtcaccgcgacggcttc
ggcttccttattccggacgacggcagcgaagatctgttcctcagcccgtcgcaaatgcgc
ctggtgttcgacggtgaccgcggcctggcccgcgtctctggcgtcgaccgccgtggccgc
cgtgaaggcgtgctggtcgaaatcatctcccgcgcccacgaaagcgtggtcggccgttac
ttcgaagaaggcggtatcggctacgtgaccccggacaacccgaagatccagcaggaagtg
ctggtcactgccgggcgcaacggcggtgccaagatcggccagttcgtcgagatcaagatc
acccactggccgaccccgcgcttccagccgcaaggcgatgtggtcgaggtcatcggcaac
tacatggcgccgggcatggaaatcgacgttgccctgcgcagctacgatatcccgcacgtc
tggcccaaagacgtgatcaaggaagcgcgcaagttccgctccgaagtcgaagagaaggac
aaggagaagcgcgtcgacctgcgccacctgccgttcgtcaccatcgacggcgaggacgcc
cgcgacttcgacgatgccgtctattgcgagccgctgggcaagctgcgcctgttctccggc
ggctggcgcctgtatgtggccattgccgacgtgtccagctatgtgcgcctgggttcggcc
ctggacgtcgaggcccagcagcgcggcaactcggtgtacttccccgagcgcgtggtaccg
atgctccccgaagagctgtccaacggcctgtgctcgctgaacccgcatgtcgatcgcctg
gcgatggtctgcgaaatgaccatgaacaaagccggccagatggtcgactaccagttctac
gaaggcgtcatccactcccacgcccgcctgacctacaacaaggtcagcagcatgctcgag
cactcccgcacccgtgagggcaaggcgctgcgcgaggagtacaaggcagtcgtgccggat
ctgaagaacctgtacaacctgtacaaggtgctggtggaggcccgtcacacccgtggcgcg
atcgacttcgagacccaggaaacccgcatcatcttcggtgacgagcgcaagatcgcggaa
atccgcccgaccgtgcgcaacgacgcccacaagctgatcgaagaatgcatgctggcggcc
aacgtggccaccgccgaattcctgcagaagcatggcgtgccggccctgtaccgcgtgcac
gacggcccgccgccggagcgtctggaaaagctgcgcgccttcctgggcgaactaggcctg
accctgcacaagggcaaggacccgtcgccgaaggattaccaggcactgctggcgagcatc
gccgggcgcccggacttccacctgatccagaccgtgatgctgcgttcgttgagccaggcg
gtgtacagcaccgacaacaacggccacttcggcctgaactacgaggcgtacacccacttc
acctcgccgatccgtcgctacccggacctgctggtgcaccgcgccatccgcagcatcatc
cgttccagggtcgaaaccccgcacgtcaagcgtgccggcgccatgagcatccccaaggcg
cgcatctacccgtacgacgagaacaccctcgagcagctcggcgagcagtgctcgatgacc
gaacgccgggccgatgaagccacccgtgacgtggtcaactggctcaagtgcgagttcatg
aaggaccgcgtgggcgagaccttcccgggtgtgatcaccgcggtgaccggtttcggcctg
ttcgtcgagctgaccgatatctatgtggaaggcctggtgcacgtcagtgcgctgccgggc
gactactatcacttcgacccggtgcaccaccgcctgtctggcgagcgtaccggtcgcagt
ttccgactgggcgacacgatcgaggtcaaggtcatgcgcgtcgacctggacgaacgcaag
atcgacttcgaagtgtcggaaaagaccctcgccgccccgatcggccgcaagcagcgtggt
gccgcaccggctgccggccaggccgagcaggccccggtcgaggccaaggccacgccgaag
ccgcgcagccgcaagagcgagaccgccgaggcatacttcccgaaagacgctgtgcagcgt
aacgccgaagtgcgcaagagccgcgaaatgaagaaggcgctgatgagcgaggcgcgcagt
ggcggccatgccagcagcaagtcggacaagggcggcaaggcctccggcaagccgaccaag
caccgtaaaggcccgtcgaagtccggcgcgccacgcaagagcaagagcaagtcatga
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