Paenibacillus polymyxa SC2: PPSC2_01885
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Entry
PPSC2_01885 CDS
T01335
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PPSC2_01885 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_01885 (lig)
Enzymes [BR:
ppm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PPSC2_01885 (lig)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PPSC2_01885 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
TMEM101
Motif
Other DBs
NCBI-ProteinID:
ADO54370
UniProt:
E3ECS6
LinkDB
All DBs
Position
complement(442036..442986)
Genome browser
AA seq
316 aa
AA seq
DB search
MKPVIPFEPELSEKVPVDVGLWRYEIKWDGTRILTYHDQGSTRLFNRKQHERTLLYPELA
HFSSYCRADSVILDGEMIALGADGKPSFHEIMRRDLIRRTDRIQAAYTAVPATYMLFDIV
YLNGEWVHRKPLQERLELLHQIIIPNERIQLAPAHPDGQALFQVMCSQGMEGIVCKKLDS
PYTLGGQDRRWVKVKNYGDIIAVIGGYTLNGGVINAVLLGQYDRQGMLRYIGHVGTGKLT
RGDWRQLTERLLPHTISERPFINKPDRHQDAFWVKPMFTAKIQYSEWRWQEGRTLRQPSI
QALVDQGIEQCIGPWK
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctgtcatcccgtttgaaccagaactgagcgaaaaagtccctgtagatgtaggc
ctttggcgttacgaaataaaatgggacggtacaagaattttaacgtatcacgatcagggc
agcacgcgtctgttcaatcgcaagcagcatgaacgaacgctattgtatccggagcttgcc
cacttctcctcctactgcagggcagattcagtcatactggacggggagatgatcgcactt
ggtgccgacggtaaaccgtcgttccatgaaattatgcgccgggatctgattcgccggacg
gatcgaattcaggcagcctatacagccgtacccgctacttacatgttgttcgatattgtt
tatctaaatggggaatgggttcatcgcaaaccgttacaggaaaggcttgaactgctgcat
cagatcatcataccgaatgaacggatccaactggctcccgctcatcctgatggacaagct
ctatttcaggttatgtgcagccaaggaatggaaggtattgtgtgcaaaaaactggatagt
ccatacacattgggcggacaggacagacgatgggtcaaggtcaaaaattatggtgatatc
attgccgttatcggtggctataccctaaacggaggcgttatcaacgctgtattgctgggc
cagtatgatagacaaggaatgctgcgctatatcgggcacgtggggacaggtaagctgact
cgtggagattggcgtcagctaaccgagcgcctcttgccacataccatatcggagcgacct
tttattaataaaccggatcggcatcaagacgcattttgggtaaagcccatgtttaccgcc
aagattcaatatagtgaatggcgatggcaagaaggacgtaccttgcgtcagccctccatc
caagctcttgtggatcaaggtattgaacagtgcatcggaccttggaagtga
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