KEGG   Paenibacillus polymyxa SC2: PPSC2_28365Help
Entry
PPSC2_28365       CDS       T01335                                 

Definition
(GenBank) hypothetical protein
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ppm  Paenibacillus polymyxa SC2
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppm00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    PPSC2_28365
   03410 Base excision repair
    PPSC2_28365
   03420 Nucleotide excision repair
    PPSC2_28365
   03430 Mismatch repair
    PPSC2_28365
Enzymes [BR:ppm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PPSC2_28365
    6.5.1.6  DNA ligase (ATP or NAD+)
     PPSC2_28365
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PPSC2_28365
DNA replication proteins [BR:ppm03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PPSC2_28365
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PPSC2_28365
DNA repair and recombination proteins [BR:ppm03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PPSC2_28365
   NER (nucleotide excision repair)
    Other NER factors
     PPSC2_28365
   MMR (mismatch exicision repair)
    Other MMR factors
     PPSC2_28365
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
pSC2:448159..449025
Genome map
AA seq 288 aa AA seqDB search
MLNKPFRPMILQKSEKVPSDKRFLHQYKWDGHRLLFHYDRGKVRLFTREMNECTHQYPEL
QSIQLPVESCILDGECIVLDPLLSPPMPCFESVMTRFHASKEISIQKYMNSLPAHFVVWD
MVFLNGKPIHQLALTKRLELLEDVVAPDSRISITPSYDDGEMLFENITKIGGEGVVSKPK
ESKYKFGSCSDHNAWYKTKNYQYEIVEIGGIRKAKFGWSLLHKGKYVGVLEFPPPKEISK
AFFKVAKQIVIKETMEWITLEPILRCKVKFQCYSKSGKMRSPSFIEFI
NT seq 867 nt NT seq  +upstreamnt  +downstreamnt
atgctaaacaaaccttttcgaccaatgatattacaaaagtcagaaaaagtcccttcagat
aagaggttcttgcatcaatataaatgggatggccatcgtttgctgttccactacgatcga
ggtaaggtgaggttgttcaccagggaaatgaacgaatgtactcaccaatatccggaatta
caatcgattcagttgccggttgaaagctgcattctggatggagagtgtattgtactggat
ccactgttgtctccccccatgccttgttttgagagtgtcatgactcgcttccatgcctca
aaagaaatttcaatccaaaaatatatgaattccttgcctgctcattttgtcgtttgggac
atggttttcttaaatggcaaacctatccatcagcttgctttaacaaagcgattagagttg
ttagaagatgtagtagctcctgacagccgaatttcgatcaccccttcttatgatgacgga
gaaatgctcttcgaaaatattactaaaattggtggggaaggggtggtgtctaaaccaaag
gagagtaaatacaaatttggttcatgttcggatcataacgcttggtataagaccaagaac
tatcagtacgagattgtggaaatcggaggaatccgaaaagcgaagtttggatggagtttg
cttcataaagggaaatatgtaggagtgcttgaattccctccaccaaaggaaatatcgaaa
gcctttttcaaggttgctaaacaaattgtgatcaaagaaacgatggagtggattaccctt
gagcctatccttcgatgcaaagtcaaatttcaatgttattcaaagtcggggaaaatgaga
tcaccgagttttatcgaatttatatag

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