Pandoraea pnomenusa DSM 16536: LV28_04380
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Entry
LV28_04380 CDS
T03411
Name
(GenBank) phenylalanine--tRNA ligase subunit beta
KO
K01890
phenylalanyl-tRNA synthetase beta chain [EC:
6.1.1.20
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
LV28_04380
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ppnm01007
]
LV28_04380
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppnm03016
]
LV28_04380
Enzymes [BR:
ppnm01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
LV28_04380
Amino acid related enzymes [BR:
ppnm01007
]
Aminoacyl-tRNA synthetase
Class II (U)
LV28_04380
Transfer RNA biogenesis [BR:
ppnm03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
LV28_04380
Prokaryotic type
LV28_04380
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
B3_4
tRNA_synthFbeta
tRNA_bind
B5
FDX-ACB
Motif
Other DBs
NCBI-ProteinID:
AIU25879
UniProt:
A0A378YE16
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All DBs
Position
2192213..2194651
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AA seq
812 aa
AA seq
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MQFSESWLRTLVDPDLSTDALAHALTMSGLEVEETNPVAPPFTGVVVAKVLEVSRHPDAD
RLNVCQVDAGTGETLTIVCGAPNVAPGIKVPCATVGAALPPAQAGDAPFQIKVGKLRGVQ
SFGMLCSARELKLSDDHAGLMILPEDAPVGMNIREYLDLDDTVFVVKLTPNKADCLSLLG
VAREVAAITGAPLKDLPGQGAQPATIADTLPVRISSPQGCGRFGGRIIRNVNAAAPSPRW
MVERLERAGQRSISALVDITNYVMLELGQPLHVYDLNRLQGGIDVRFGRAGETLKLLNEQ
TVALDESVLAITDASGPIGLAGIMGGDSTKAGLQTQNIFLEGAFFFPQAIQGRARKYNFT
SDASHRFERGVDFAGNVRALERATQLVLEICGGQAGPLEDQVAQLPERAPVKMRVARAVK
ILGVPVSEQEMSAIFTRLGLPFTLEDGVFEVAPPSYRFDIEIEEDLIEEIARIYGFDRIP
ANPPVAASEMRPTNEGRRSQHAVRHAVAARDYHETVGFSFVDMEWEADFAGNDNPIKLLN
PIASHLAVMRSTLIGSLIATARYNLNRKASRVRVFEIGRTYHRDNSVASGELSVAGYRQP
LTVAALAYGPALEEQWGAPARQVDFFDVKGDLEALLAPRTARFVKAEHPALHPGRSAAIE
VDGKRVGFIGELHPRWQQKYDLPHAPVLFEIEAEALFARDVASYEEISKFPPVTRDIALV
VDQSQPVQGLLDAMLAARQDDPACSIVQTVRLFDEFRPKAGAPSGSLGAQDKSVAFRVTL
QDPSGTLQDETVQGAINALVKRVEGFGARLRG
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgcaattctctgaatcgtggctgcgtaccctggtcgacccggatttgtcgaccgacgcg
ttggcgcatgccctgacgatgtccgggctcgaagtcgaggaaaccaatcccgtcgccccg
ccgtttaccggcgtggtggtggccaaggtgctcgaggtgtcgcgtcatccggatgctgac
cgcctgaacgtttgtcaggtcgatgccggcaccggcgagacgctcaccatcgtgtgcggt
gcgccgaacgtggcgccgggcatcaaggtgccgtgcgccacggtgggtgcggcgctgccg
ccggcgcaagccggcgatgcgccgttccagatcaaggtaggcaagctgcgcggcgtgcag
agtttcggcatgctgtgctcggcgcgcgagctcaagctctccgacgaccacgcgggtctg
atgatcctgccggaagacgcgccggtgggcatgaacatccgtgaatatctcgacctcgac
gacacggtgttcgttgtcaagctcacccccaacaaggcggattgcctgtcgctgctcggt
gtggcgcgtgaagttgccgccatcaccggggcgccgctcaaggatctgccggggcaaggt
gcgcagccggccacgattgccgacacgttgccggtgcgcatcagctcgccgcagggctgc
ggacgcttcggtggccgcatcatccgcaacgtgaatgccgccgcgccgtcgcctcgctgg
atggtcgagcgtctcgagcgcgcggggcaacgcagcatctctgcgctggtggacatcacc
aactacgtgatgctcgaactggggcagccgctgcacgtctacgatctgaaccgactgcaa
ggcggaatcgacgtgcgcttcgggcgtgcgggcgaaacgctcaagctgctcaatgaacag
accgtggcgctcgacgagagcgtgctcgccatcactgatgccagcggcccgatcggtctt
gccggcatcatggggggcgattcgaccaaggccggtttgcagacgcagaacatcttcctc
gagggcgccttcttcttcccgcaggccattcagggccgtgcgcgcaagtacaacttcacc
agcgatgcgtcgcaccgcttcgagcgcggcgtggacttcgccggcaacgtacgtgcgctg
gagcgtgccacgcaactggtgctcgagatctgcggcggccaggccggtcccctggaggat
caggtggcgcagctgcccgagcgcgcaccggtgaagatgcgtgtcgcacgagccgtcaag
atcctgggtgtaccggtctcggagcaagagatgagtgccatcttcacgcgccttggcttg
ccgttcacgctggaagacggtgtgttcgaggtcgctcccccgtcgtatcgtttcgacatc
gagatcgaagaagacctgatcgaggaaatcgcgcgcatttacggcttcgaccgtattccg
gccaatccgccggtggccgcgagcgagatgcgcccgacgaacgaaggtcgtcgctcgcag
catgccgtgcggcatgccgtcgcggcgcgcgattatcacgagacggtcggcttcagcttt
gtcgacatggagtgggaagccgacttcgccggcaacgacaatccgatcaagctgctcaac
ccgatcgccagccacctcgcggtgatgcgctccacgctgatcggcagcctgatcgcgacc
gcgcgctacaacctgaaccgcaaggcctcgcgcgtgcgcgtgttcgagatcggtcgcacc
tatcatcgcgacaattcggtggcgtcgggcgaactgagcgttgccggctaccgccagccg
ctcaccgtcgccgcgctcgcctatggcccggcgctcgaggagcagtggggcgcccccgcg
cgtcaggtggacttcttcgacgtgaagggcgacctcgaggcattgctggcaccgcgcacg
gcgcgtttcgtgaaggccgagcacccggcgttgcacccgggacgcagtgctgccatcgaa
gtggacggcaagcgcgtcggtttcattggcgagttgcatccgcggtggcagcagaaatac
gacctgccgcatgcgccggtgctgttcgagatcgaggccgaggcactgttcgcccgcgat
gtcgcgagctacgaggaaatctcgaagttcccgccggtcacgcgcgacattgcgctggtc
gtcgatcagtcgcagccggtgcagggattgctcgatgccatgctcgcggcacgccaggac
gatccggcatgcagcatcgtgcaaacggtgcggctgttcgacgaattccggccgaaggcc
ggtgccccgtcgggctcgctgggcgcgcaggacaaaagcgtggcgtttcgtgttactctg
caagacccctcgggtacgttgcaggacgagacggtccagggcgccattaacgcactggta
aaacgggtagaagggttcggcgcgcgcttgcgcggttga
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