Paenibacillus polymyxa M1: PPM_0359
Help
Entry
PPM_0359 CDS
T01968
Symbol
lig
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppo
Paenibacillus polymyxa M1
Pathway
ppo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PPM_0359 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppo03400
]
PPM_0359 (lig)
Enzymes [BR:
ppo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PPM_0359 (lig)
DNA repair and recombination proteins [BR:
ppo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PPM_0359 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
TMEM101
Motif
Other DBs
NCBI-ProteinID:
CCC83296
LinkDB
All DBs
Position
complement(440736..441701)
Genome browser
AA seq
321 aa
AA seq
DB search
MLGTEMKPVIPFEPELSEKVPVDVGLWRYEIKWDGTRILTYHDQGSTRLFNRKQHERTLL
YPELAHFSSYCRADSVILDGEMIALGADGKPSFHEIMRRDLIRRTDRIQAAYTAVPATYM
LFDIVYLNGEWVHRKPLQERLELLHQIIIPNERIQLAPAHPDGQALFQVMCSQGMEGIVC
KKLDSPYTLGGQDRRWVKVKNYGDIIAVIGGYTLNGGVINAVLLGQYDRQGMLRYIGHVG
TGKLTRGDWRQLTERLLPHTISERPFINKPDRHQDAFWVKPMFTAKIQYSEWRWQEGRTL
RQPSIQALVDQGIEQCIGPWK
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
gtgttgggtacggaaatgaagcctgtcatcccgtttgaaccagaactgagcgaaaaagtc
cctgtagatgtaggcctttggcgttacgaaataaaatgggacggtacaagaattttaacg
tatcacgatcagggcagcacgcgtctgttcaatcgcaagcagcatgaacgaacgctattg
tatccggagcttgcccacttctcctcctactgcagggcagattcagtcatactggacggg
gagatgatcgcacttggtgccgacggtaaaccgtcgttccatgaaattatgcgccgggat
ctgattcgccggacggatcgaattcaggcagcctatacagccgtacccgctacttacatg
ttgttcgatattgtttatctaaatggggaatgggttcatcgcaaaccgttacaggaaagg
cttgaactgctgcatcagatcatcataccgaatgaacggatccaactggctcccgctcat
cctgatggacaagctctatttcaggttatgtgcagccaaggaatggaaggtattgtgtgc
aaaaaactggatagtccatacacattgggcggacaggacagacgatgggtcaaggtcaaa
aattatggtgatatcattgccgttatcggtggctataccctaaacggaggcgttatcaac
gctgtattgctgggccagtatgatagacaaggaatgctgcgctatatcgggcacgtgggg
acaggtaagctgactcgtggagattggcgtcagctaaccgagcgcctcttgccacatacc
atatcggagcgaccttttattaataaaccggatcggcatcaagacgcattttgggtaaag
cccatgtttaccgccaagattcaatatagtgaatggcgatggcaagaaggacgtaccttg
cgtcagccctccatccaagctcttgtggatcaaggtattgaacagtgcatcggaccttgg
aagtga
DBGET
integrated database retrieval system
