KEGG   Paenibacillus polymyxa M1: PPM_2737Help
Entry
PPM_2737          CDS       T01968                                 

Gene name
ligB3
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ppo  Paenibacillus polymyxa M1
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppo00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    PPM_2737 (ligB3)
   03410 Base excision repair
    PPM_2737 (ligB3)
   03420 Nucleotide excision repair
    PPM_2737 (ligB3)
   03430 Mismatch repair
    PPM_2737 (ligB3)
Enzymes [BR:ppo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PPM_2737 (ligB3)
    6.5.1.6  DNA ligase (ATP or NAD+)
     PPM_2737 (ligB3)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PPM_2737 (ligB3)
DNA replication proteins [BR:ppo03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PPM_2737 (ligB3)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PPM_2737 (ligB3)
DNA repair and recombination proteins [BR:ppo03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PPM_2737 (ligB3)
   NER (nucleotide excision repair)
    Other NER factors
     PPM_2737 (ligB3)
   MMR (mismatch exicision repair)
    Other MMR factors
     PPM_2737 (ligB3)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
3206218..3207078
Genome map
AA seq 286 aa AA seqDB search
MFISPMLLETAAAPFSDSRYIFEPKIDGHRLIYSQQNGIVRLFTRHNNDCTRQYPEIASV
TFPHDIVLDGEIACVDPTTGVSDFESVMSRFQARKTDKITKLVAELPATFVVFDVLSFKG
EDLRSLPLMERKSILASLTLPSPSFGVVPYIEGAGEALFEQIEARGMEGLVAKRKDSMYI
SRRSASWQKVINWSYADVYITGYRKEEFGWLVSVPNERGNLRPAGIIEHGASPMHKKAFY
GVVAPLKTDEDREFVYVEPRIRARVKMRNWTKAGNLRIPVFTEFIV
NT seq 861 nt NT seq  +upstreamnt  +downstreamnt
ttgtttatttctccaatgttacttgaaacagcggctgcccccttttcggattcgcgctat
atcttcgaaccgaaaatagacggccaccgcttaatatattcgcaacagaacggcattgta
cgcttattcacgcgccataacaatgactgcacacgccaatacccggagatagctagcgtt
acattcccgcatgacattgtgttggacggtgagattgcgtgcgttgatccgacaacgggt
gtatcggattttgaatccgttatgtcccgcttccaggcgaggaaaacggacaagattact
aagctcgtagctgaattaccggctactttcgttgtcttcgatgtcttgagctttaaaggc
gaggacttgcggagccttccgcttatggaacgcaagtccatactcgctagtctaacgctt
cctagccctagtttcggggttgttccgtatattgaaggcgccggggaggcgttgttcgag
cagatagaagcgcgcggcatggaaggcctggtcgccaagcgtaaggatagtatgtatatc
agccgccgatcagcgtcctggcagaaggtcattaactggtcctatgccgatgtgtacatt
acgggttatcgtaaagaggaattcggatggcttgtatcagtgcctaatgagcgcggtaac
cttcgtcccgccggcattattgagcacggagctagcccaatgcacaagaaggcgttctat
ggcgtcgtggcaccgttaaagaccgatgaggatcgcgaatttgtttacgtggagccgcgc
ataagagcccgtgttaaaatgcgaaactggactaaggcgggtaacttgcggataccagta
tttacggaatttatagtttaa

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