Paenibacillus polymyxa CR1: X809_01490
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Entry
X809_01490 CDS
T02956
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
X809_01490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppol03400
]
X809_01490
Enzymes [BR:
ppol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
X809_01490
DNA repair and recombination proteins [BR:
ppol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
X809_01490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
TMEM101
Motif
Other DBs
NCBI-ProteinID:
AHC18027
LinkDB
All DBs
Position
complement(324820..325782)
Genome browser
AA seq
320 aa
AA seq
DB search
MRTEIKPVIPFEPELSEKVPVDPGLWRYEIKWDGTRIMTYHDQGGTRLFNRKQHERTLLY
PELALFPSYCKADSVIMDGEMIALGADGKPSFHEIMRRDLIRRTDRVQSAYEAVPATYML
FDIVYLNGEWVHLKPLQERLELLHQIIIPNERIQLAPAHPDGQALFQVMCSQGMEGIVCK
KLDSPYTLGGKDGRWLKVKNYGDIIAVIGGYTLNGGIINAVLLGQYDKQGMLRYIGHVGT
GKLTREDWRQLTERLLPHIISERPFSNKPDRHQDAFWVKPMYTAKVQYSEWRWQEGRTLR
QPSIQAFVNQGPDQCIGPWM
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtacagaaataaaacctgtcatcccgtttgagccggaactgagcgaaaaagtacct
gtagatccgggcctttggcgttacgaaataaaatgggacggtacgagaattatgacgtat
cacgaccagggcggtacgcgtctgttcaaccgcaagcagcatgaacgaacgcttttatac
ccggagcttgctctctttccctcctactgtaaggctgattcggtcataatggacggggaa
atgatcgcactcggtgccgacggtaagccatcgttccatgaaattatgcgacgggatctg
attcgtcggacggatcgagttcagtcagcctatgaagctgtacccgctacttacatgttg
tttgatattgtttatctgaacggggagtgggttcatcttaaaccgttacaggaaaggctt
gaactgctgcatcagatcatcataccgaatgaacggattcaactggctcccgctcatcct
gatggacaagctctatttcaggttatgtgcagccaaggaatggaaggcattgtgtgtaaa
aagctggatagtccgtacacattgggcggaaaggacggacgatggctcaaggtcaaaaat
tatggcgatattattgccgttatcggtggctataccctaaacggaggcattatcaatgct
gtgttgctgggccaatatgataaacaaggaatgctgcgctatatcgggcatgtggggacg
ggtaagctgactcgggaagattggcgtcagcttaccgagcgcctgctaccacatatcata
tcggagcgaccttttagcaataaaccggatcggcatcaagacgcattttgggtgaaaccc
atgtataccgccaaggttcaatatagtgaatggcggtggcaagaaggacgtaccctgcgt
cagccctccatacaagcctttgtgaatcagggccccgatcagtgtatcggcccctggatg
tga
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