Paenibacillus polymyxa CR1: X809_06005
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Entry
X809_06005 CDS
T02956
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
X809_06005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppol03400
]
X809_06005
Enzymes [BR:
ppol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
X809_06005
DNA repair and recombination proteins [BR:
ppol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
X809_06005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AHC18830
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All DBs
Position
complement(1349206..1350108)
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AA seq
300 aa
AA seq
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MGQAVKGTITIEGQEIPITNPDKPLWPEAGVTKALYLRKLAVLAPFLLKYCHHRLLTVIR
WPHGIHGDFFYQKNAPRPRPDYIETALHDGIEYIVLGKLPQLLWLGNQAALEFHPSLHEA
GSKLPCEWMIDLDPSREVEPRIMEAASIVGEVLASLGLDSVPKTSGATGVQIIVPIRTGI
TFDELRSIGLLVGQFVTEKHPHLFTLERLKKDRGTAIYFDYLQHYQGKTLAAPYTPRARP
GATVSTPLTWEEVRQDVSPLDYHLLNIEERLNQVGDLIDKVPPQPVEDVLKHMRTKAHRT
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagctgtaaaaggtactattaccattgaaggtcaggaaattcctatcacaaac
ccggataaaccgctgtggcctgaagcaggcgtgactaaggcgctatatcttcgcaagctc
gcggtattggctcccttcctgctcaaatattgccatcatcgcctactgaccgtcatccgc
tggccacatgggattcacggtgattttttttatcagaaaaatgccccacgtcctcggccg
gactatattgaaaccgctctgcatgatggtattgaatatatcgtgctcggcaaattgcca
caacttctctggcttggtaatcaagctgcgttggaattccacccctctctgcatgaagcg
ggaagcaagctgccctgtgaatggatgattgaccttgatccatccagagaggtggagcca
cgtattatggaggcagcctctattgtcggtgaagtactggcttcgcttggtttggattcc
gtccccaaaacttccggggccacaggtgtacaaattatcgttccgatccgtacaggcata
accttcgacgaacttcgcagcatcgggctattagttggacagtttgtgacagaaaagcac
ccgcatctgttcacactcgaacggttaaagaaggatcggggaacagccatctattttgat
tatttgcagcattatcaagggaaaactctggccgctccttataccccgcgggcacgccct
ggcgctacggtctccactccgctaacatgggaagaggtacggcaagatgtatcaccactt
gactaccatttgctgaatattgaggaacgactaaaccaggtaggcgacttgatcgacaag
gttcctccccagcccgtagaagacgtcctcaagcatatgcgcaccaaggcacaccgaacc
tga
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