Paenibacillus polymyxa CR1: X809_36380
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Entry
X809_36380 CDS
T02956
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X809_36380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppol03019
]
X809_36380
03009 Ribosome biogenesis [BR:
ppol03009
]
X809_36380
Enzymes [BR:
ppol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
X809_36380
Messenger RNA biogenesis [BR:
ppol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X809_36380
Ribosome biogenesis [BR:
ppol03009
]
Prokaryotic type
rRNA helicases
X809_36380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AIW41420
LinkDB
All DBs
Position
complement(4726150..4727541)
Genome browser
AA seq
463 aa
AA seq
DB search
MTLNFESLGVEQDLLDKLTEHEITQPSPVQAEAIPEIMKGKHVLARSQTGTGKTLAYLLP
LLQAIDPQKKATQKLILAPSQELAMQIVREGQRYGEHRGIRVLGLIGGAAIKRQIEKLKD
HPQLVVGTPGRVRELIASKKLKMHNITAIVIDEVDQMFQLGGAGDVTNILGTAQRDRQLV
FLSATLNDEIQSLAKREMREYVEIGIDPDQKTASGLEHYYFVSEERDKVDMLRRLVRHFN
PRKALVFVNTTNAIGEIEAKLKHMGLTTASLYGDADKVTRSNVLARFREDKLKVLVASDV
AARGLDIEGLEMVIHFDPATDSQAYVHRAGRTGRMGRKGLVASVVTDRETFIMRKFSREL
GIDIAERALHGGRVVVPRPADAKRASVRPSEARSISDGAQAENRKAPVRTENGCPGRNSA
NGSAPGKSKGAALSKAGKAQRERDRKNKGAPRWLKEKGSKPNE
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgacattgaattttgaatcgctcggcgttgaacaagatctgttggacaaactgactgag
catgaaattacacagccttcgccagttcaggcagaggctataccggaaataatgaaggga
aagcatgttttggcgcgttcacaaactggcacaggcaagacactggcttatttgttgccg
ctgttgcaagcgattgatccacagaaaaaggctacacaaaagctgatactagctccaagc
caggaactggccatgcaaattgtacgtgagggtcagcgctacggagagcatcgcggaatc
cgtgtactcggtctgattggtggggcggctatcaaacgtcaaatcgaaaagctcaaggat
catccacagcttgtcgtgggcacaccaggacgtgtacgggaactcatcgcttcgaaaaag
ttgaaaatgcacaatattacagccattgtcattgatgaggtggatcagatgttccagctc
ggcggagcaggcgatgtaacaaacatattgggcaccgcccaacgtgatcgtcaattggta
ttcctgtccgcaacgctgaacgatgagattcagtcgctggcgaaacgggagatgcgtgaa
tacgtagaaattgggattgatcccgaccaaaagacggccagtggactggaacactattac
tttgtatctgaagaacgggataaagtggatatgctgcgccgtctggtgcgtcattttaat
ccaagaaaagcgctggtgttcgtgaatacaaccaatgccatcggggagattgaagccaag
ctcaagcatatggggctgactacggcatccttgtatggagatgcggataaagtcacgcgt
agcaacgtgttggcccgattccgcgaggacaagctcaaagtgctggtcgcttcggatgtg
gcagcccgtggtctggatattgagggccttgaaatggtcattcattttgacccggctacg
gatagtcaagcttatgttcaccgtgcaggacggacaggacggatgggacgcaaaggattg
gtggcgtcggttgttaccgaccgtgaaacgttcatcatgcgtaagttctcccgtgaactg
ggcattgacatcgcagagcgtgcgttgcatggaggtcgagtagttgtgccgcgtccggcg
gatgctaagcgtgcatctgtaagaccatccgaggccagatccatatctgacggagcacag
gcggaaaaccgtaaggcacctgttcgtaccgaaaacggatgtcctggcaggaattccgcg
aacggttcagctccaggcaagagcaaaggagcagccttgtccaaagcaggaaaagcacag
cgtgagcgtgatcgcaaaaacaagggtgcaccaagatggctgaaggaaaaaggatcaaaa
ccgaacgagtaa
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