Paenibacillus polymyxa Sb3-1: RE92_11485
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Entry
RE92_11485 CDS
T03812
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RE92_11485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoy03400
]
RE92_11485
Enzymes [BR:
ppoy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RE92_11485
DNA repair and recombination proteins [BR:
ppoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RE92_11485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJE51611
LinkDB
All DBs
Position
complement(2621394..2624921)
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIQAFTKDADYASIAAGISSGMKEQLISGLSGSSRQVLMAALAEDTGRPLMVMTHN
MFAAQKIADDLQEALSPDQVLLYPANELVAAEAAISSPETLSQRIDVLIRCAQGFRGVVV
VPFSGVRRLLPIPETWREARVELKEGETIQLEAFLLHMVEMGYQRVERVESRGEMSVRGG
IIDFYPMTTRWGYRVELFDDEIDSIRMFDPQDQRSVEKVQEVTVTPCKEVIASHQRMDQA
ADAAAMLLEEQLDKMTDRQAKQHLKEEIHREIELLREHVYFDEIYKYISLLYPERKTLAD
YMPADTILIIDEPARMLETARQLERDESEWNLHLLQNGKTLPQLELSDNSDNLLYNRRFQ
TLFLSIFLRQVPHTQPQNILNFICRGMQDFHGQMNVLKAEMDRWRKAGTQVMMLASGDER
LDRMRRVLQDYGIDEPTMAIGNLQSGFEMPSIHLAVITEGEMFSQKQRKARKQGRHVDNA
ERIKSYSELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKIYKLGGNEWTRVKSKVRSSVQDIADDLIKLYAERQSAPGFAFEKDSP
EQQEFEDMFPYDETRDQVRAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAVLVPTTILAQQHYETFRERFSGYPFNIQVLSRFRSRKEQNETTKGVRQGTVDIVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRVQGIQEMAAE
INALVPDAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDQSNRNWSTSIDLS
VDAYLPGDYIYDSIQKIEIYKKVAAVSTFDEASELEDELVDRFGDLPEAVRHLLAVARLK
VYGRMYGIESIVQRDDNMVLKFHEGRQQALQTAKLAEIGNRFERRVQFEQGTSMSVRIKG
KGLNDAQLLELLEQFLSALKEAFTLKEELQNVTTK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttattcaggcttttacgaaggatgctgattatgcatccattgcggca
ggtatatcctcaggcatgaaggaacagctgatatcaggcttgtcaggctcttcaagacag
gtactgatggccgcacttgctgaagatactggacgaccgttgatggtcatgacgcacaat
atgtttgctgctcaaaaaatagcagatgatttgcaggaagcgctttctcctgatcaggtt
ttattgtatccagccaacgagttggtagctgctgaagctgccatatccagtccagagaca
ttatcccaacgaattgatgtattgatacgatgcgcccagggttttcgtggggttgttgtc
gtgccattttctggggtccggcgtctactaccaatcccggaaacatggcgtgaggctcgt
gttgagctgaaagagggagaaacgattcagctggaagcatttttgctgcatatggttgag
atgggataccagcgtgtagaacgtgttgaatcccgcggggagatgagtgtacgcggggga
attatcgacttttacccaatgacaacccgttggggctatcgtgtggagttgtttgacgat
gaaattgactccatccgtatgtttgatccgcaagatcaacgttcggtggaaaaggtacag
gaagttactgtaacgccatgtaaggaagttattgcaagccaccagcgtatggaccaagct
gccgatgccgctgctatgttgttggaggaacagctggacaaaatgacagatcgtcaggct
aagcagcatctgaaagaggaaattcatcgtgaaattgagctgttgcgggagcatgtgtat
tttgacgaaatctataaatatatctccctgctatatcctgaacgtaaaaccttggctgat
tatatgccggcagatacgattctgatcattgatgaaccagcacggatgctagaaacagcc
aggcagctagagcgggatgagtctgagtggaatctgcatttgcttcaaaacggtaaaact
ctaccgcaactggagctatcggataactcggataatctgctgtataatcggagatttcaa
accctgttcctgtcgatcttccttcgccaggttccgcatacgcagccgcaaaatattttg
aacttcatttgccggggcatgcaggatttccacggtcaaatgaatgtactcaaggcagag
atggatcgttggcgcaaggcaggcacacaggttatgatgctggcgagtggagatgaacgt
ctggatcggatgcggcgagtgcttcaagactacggtattgatgagccgactatggcgatt
ggtaatctgcaaagcggttttgagatgccgtctattcatctggcggtgattaccgagggt
gagatgttctcccagaagcagcggaaagcacgtaagcagggccgacatgtagacaatgca
gagcggattaagagctatagcgagctgaaggtgggcgactatgtcgtacaccaaaatcac
ggaatcgggaagtatatgggaatcggtacgctggaggttggcggtatccataaggattac
atgcatatcctctatgcaggcggagataagctgtctgtaccgattgaacaaattgatctg
attcagaagtatgtgggctcagaggacaaggagcccaaaatttacaaactgggcggcaat
gagtggacacgtgttaaaagtaaggtgcgcagctcggttcaggacatcgcagatgacctg
atcaagctatatgcggaaagacagtcagcaccaggctttgcttttgaaaaggattcgccg
gagcaacaggaatttgaggatatgttcccgtatgatgagacacgtgaccaggttcgggct
attgaagaaattaagaaggacatggagcagagtcgtccaatggatcgtttgctgtgcggt
gacgtaggctacggcaagactgaggtggctattcgtgctgcttttaagtctgctattgag
ggcaaacaagtggctgtgctggtaccgacgacgattttggcgcaacagcactatgagaca
ttccgtgagcgcttttctgggtatccgttcaatattcaggtattgagccgtttccgctcg
cgcaaagagcagaatgagacgaccaagggagttcgacaaggtacggttgatattgtcatt
ggtactcaccgtctactttcacaggatctggtgtttaaagatctggggctgcttattgtc
gatgaggagcaacgttttggtgtcacgcacaaagaaaagctgaaaaaactgaaaacgaat
gtagatgtgttgacgctaacggctacacctattccgcgtacgctgcatatgtccatgctg
ggtgtacgtgatttgtcagtcattgagacgccaccggaaaatcgttttccagtgcaaact
tatgtcgttgagcatagccagactctagttcgtgaggccattgaacgcgagatggcacgc
ggagggcaggtttattacctgtataatcgcgtgcagggtattcaggagatggctgccgag
atcaatgcacttgtcccagacgccaaggtgggcgtaggccacggacagatgtctgaaacg
gaactggagaaaaccattttggatttcctggatggtgaatatgatgtactggttagcacg
agcattatcgaaaccggtgtggatattcccaatgtgaatacactcattgtgcatgatgcc
gataaaatggggctctcccagctttatcagctgcgtgggcgtgtaggtcgttccaaccgg
attgcctatgcttatttcacgtaccagcgagataaggtgcttacagaggtagcggagaag
cgacttcagtctatcaaagaatttacggagttgggctccgggttcaagattgcaatgcgt
gatttgtccatccgcggagcgggtaacttacttggcgccgagcagcacggattcatcgca
tccgtcggttttgatctttactcacaaatgctggctgaggaaatcaataaacgtaaagtc
agtgtgcttggagaagaggatcaatccaaccggaattggagtacatcgattgatttgagc
gtcgatgcttacctgccgggagactatatttatgacagcattcagaagattgagatttat
aaaaaggttgcggcagtcagtacctttgacgaggcttccgagctggaggacgaactggtc
gaccggtttggcgatctgccagaggcagtgcgtcatttgctggccgtggcccgtctcaag
gtgtatggacggatgtatggcatcgagtccattgttcaacgggatgacaatatggtgttg
aaatttcacgaggggcgccagcaggcgctgcagactgccaaacttgccgagattggcaat
cgctttgaaagacgtgtacaatttgaacagggtacttctatgagcgtacgcataaagggt
aaaggtctaaatgatgcacaactgctagaactgctggagcaatttttgagtgcattgaaa
gaagcattcacattgaaggaggaactgcaaaatgtcacaactaaataa
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