Physcomitrium patens (spreading earthmoss): 112278811
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Entry
112278811 CDS
T01041
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112278811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppp03041
]
112278811
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112278811
Spliceosome [BR:
ppp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112278811
Complex B
112278811
Complex C
U2 SnRNP specific factors
112278811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
112278811
NCBI-ProteinID:
XP_024368370
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All DBs
Position
2:complement(11304556..11310777)
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AA seq
932 aa
AA seq
DB search
MSKRRFGFEGFGISKKTNFEFEAQPAKPRLYLPSPSRNRRSDNVEDHDLDNIGYEDDERD
SENFMDRALPNASRSSQCASGSLGKPLKGKQDEPWFGSDDDDNDNHAGGGAVPDDDEVDP
LDAFMEGIREEVKKAPVKPRAIVEELEDDEDDPMESFLKARRDAGLSLAAEALHAGYDSD
EEVYAAAKAVDNGQIEYDFDDNAIVTLDKKKIESLAPLDHSDLDYDRFSKDFYEESASIS
SMTEEEVAVYRKSLAIRVSGFDVSRPVKTFEDLSFDPPLMNAMAKQGYEKPTAIQCQACP
IVLSGRDLIGIAKTGSGKTAAFVLPMMVHIMDQPDLSKGEGPIGVICAPTRELAQQIYSE
AKKFAKVYGIRVSGVYGGMSKFEQFKELKAGCEVVVATPGRLIDMIKMKALTMRQATYVV
LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPKRVERLAREILTDPIRVTVGEVG
SANEDITQVVTVLPSDAEKTPWLIDRLQNFVDDGDVLVFASTKLRVEELEGKITEKGFKV
AALHGDKSQATRMEVLQNFKNGIYHILVATDVAARGLDIKSIKTVVNVDIARDMDSHVHR
IGRTGRAGDKDGVAHTLVTGKEARFAGELVTSLIAAGQNVPTELKDLAMKDGRYRAQREG
QRKGGGGGGGGGGGRGKGRGRGGGQGKDGRGGGGGRNVRGVDFGLGIGYSADAASTAPSA
PLEKTPKVQYKREEVPTRGTAVDSLKLGMMARFKSSFVAANTANSVSYTPSQANTPQGLV
YGAKPTVNGKGRGNFVSAGIGFGSQSGSGFTSAGSSAHTLGDFQGGNAVGRQVPSSTGST
GGIPPSLNASYSREVLNAGCVPPAATAVGVERAVDRDGGRERERSRWDRDQDQITNSKQD
PREASSLEDGKPDHQSDRERPRQRRRPSGWDR
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcggaggtttggattcgagggttttggcataagcaagaaaacgaatttcgaa
tttgaggcgcaacctgccaagccgcgtctgtatttaccatccccttcacggaataggcgc
tccgacaacgtggaggatcatgatttagataacattggatacgaggacgatgagcgtgac
tctgagaatttcatggaccgtgctctgcctaatgcctctagaagtagtcaatgtgctagt
ggatcattgggcaagccactgaaggggaaacaggatgaaccatggtttggaagcgatgac
gatgacaatgacaatcatgcaggaggtggcgccgtgcctgatgatgatgaagtcgatccg
ctcgatgcgttcatggaaggcattcgcgaggaggtgaagaaagcacctgtaaaacccaga
gctatagtcgaagagttggaggatgacgaagatgatccaatggagagttttctcaaggct
cgacgggacgcaggcctctcattggctgctgaagccttgcacgctggttatgatagtgac
gaggaagtgtacgcggctgcgaaggcagttgacaatggacagattgagtacgactttgat
gacaatgcaattgtgaccttagacaaaaagaagatcgagtctcttgctcctctagaccac
agtgacctggattatgatcgattttcgaaggacttctacgaagagtctgcctcaatttca
agtatgactgaagaggaagtagcagtctatcgcaaatcactggctattagggtatcggga
tttgacgtttcaagacctgtgaagacgtttgaagacttaagttttgatcctccgttgatg
aatgcaatggcaaaacagggttacgaaaaacctactgcgattcaatgccaggcttgtccg
atagtattgtcaggtcgagacttgataggaatcgctaagaccggatcaggaaagaccgca
gcctttgttctgcctatgatggtacatattatggatcaaccagatcttagtaagggcgaa
ggtcctattggtgttatttgtgcaccaacacgtgagcttgctcaacaaatttattcggag
gccaagaaatttgctaaggtgtatggtatcagagtctcgggtgtttatggagggatgtcc
aagtttgagcagttcaaagagttgaaggctggatgcgaggtagtagttgctacccctgga
cgcttgatagacatgataaagatgaaagcgttgacgatgcgccaggcaacatatgttgtg
cttgatgaagctgatcgcatgttcgatctagggtttgaacctcagattcgatccattgtc
gggcaaatcaggcccgatcgccaaacgttactattttctgctactatgccaaagcgagtg
gagcgtcttgctcgtgagattctgacagatccaatcagggtcacagttggtgaagttgga
agtgcaaatgaagatattacgcaggtggtgactgttctgccttccgacgccgagaaaact
ccttggttaattgacaggctgcagaatttcgtagatgatggagatgttctggtatttgcg
tctacaaagttgagagtggaggagctagagggaaaaattaccgagaagggctttaaagtc
gctgctcttcatggagacaagagccaggctacaagaatggaagttttgcagaattttaag
aatggaatttatcatattcttgtggcaactgatgtagcagctcgaggtttggacattaag
tctattaaaacggttgtgaatgttgatatcgctagagatatggatagtcatgtacaccgg
attggacgaacagggagagctggtgataaagatggggtggctcatacacttgtgacagga
aaggaagcccgttttgctggtgaacttgtgacaagcctcattgcggcaggacagaatgtc
cccacagagctgaaggaccttgccatgaaggatggtcgttaccgtgctcaacgagaggga
cagcgtaaggggggaggaggaggaggaggtggtggtggtggtagaggaaaaggtagaggt
cgtggtggaggacaggggaaagatggacgaggtggaggtggagggcggaatgttcgaggt
gttgactttggcttaggtattggctacagtgccgatgctgcgagtaccgcacccagtgca
cctctagaaaaaacgcccaaagttcaatacaagagagaagaggttccaacacgaggcact
gctgtggattctcttaaactaggaatgatggctcgattcaagagcagtttcgttgcagcc
aatacagccaactctgtaagctacacgccatctcaagcgaatactccacaagggcttgtc
tatggtgccaaaccaacagttaacggaaagggccgcggaaactttgtatctgcaggtatt
ggttttggatctcaatctgggtccggcttcacatcggcaggctcttctgctcatacatta
ggagatttccagggtggaaacgcagttgggaggcaagttccaagttcaactgggtctacg
ggtgggattcctccgtctttaaacgcttcctattctagggaagttttgaatgcaggatgt
gtcccgccagctgctactgctgtaggagttgagagagcagtggatagagatggtggaaga
gaaagggagaggtcaaggtgggacagggatcaggatcagatcacaaatagtaaacaggat
cctcgagaagcaagtagtcttgaagacgggaaaccagatcatcagtctgatagggaaagg
cctagacagcgacgacgcccttcaggttgggatcggtaa
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