Physcomitrium patens (spreading earthmoss): 112288023
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Entry
112288023 CDS
T01041
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03022
Basal transcription factors
ppp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112288023
09124 Replication and repair
03420 Nucleotide excision repair
112288023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112288023
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112288023
Enzymes [BR:
ppp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112288023
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112288023
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112288023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
nSTAND3
AAA_11
Motif
Other DBs
NCBI-GeneID:
112288023
NCBI-ProteinID:
XP_024387541
LinkDB
All DBs
Position
10:complement(11200956..11207390)
Genome browser
AA seq
750 aa
AA seq
DB search
MKFKIEGLTVYFPYEFIYPEQYDYMVDLKRTLDARGHCLLEMPTGTGKTITLLSLITSYM
LANPSVGKLIYCTRTVHEMEKVLEELRKLQAYQEKALGKAAKMLALGLSSRKNLCIHPQV
SGEGSRESVDAGCRKLTASWVRSLALDNPNIELCPYYEGYEKGGADALLPSGVYTLHDLR
GFGREKRWCPYFLARHMIQFANVVVYNYQYLLDPKVAGIISKEMEKECVVVFDEAHNIDN
VCIEALSVNIRQQTLDGATRNLSQVTQLIEKSKATDANRLRQEYSRLVEGLAQRGNLAGT
DTWLANPALPQDILQEAVPGNIRRAEHFVAFLKRLVQYIKNRMITEKVESESPVSFVTAL
QNQAGIDQKSLKFCYDRLHSLLLTLEVTNTDEFMYIQTVCDFATLVGTYTRGFTIIIEPY
DERMPNIPDPVLQLSCLDSSLAIKPVFEKFQSVVITSGTLSPIDLYPRLLNFHPVISNSY
KMTLTRDCLCPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVTAVPDGIVCFFVS
YSYMDGIVNSWNEMGILQEVMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVAR
GKVAEGIDFDRHYGRLVIMYGVPFQYTLSRILRARLEYLRETFQIKENDFLTFDAVRQAA
QCVGRVIRSKADYGMMIFADKRYNRHDKRSKLPGWILSHLREAHLNLSTDMSVHIAREFL
RRMAQPYDKTGKGLNATLLSQADLEKMEKK
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcaagattgaggggctcacggtttacttcccgtacgagttcatttatccggag
cagtatgattacatggtggatctcaagaggacactcgatgcgaggggccactgtttgttg
gaaatgcccacaggaaccgggaaaacaatcaccctgctgtcactgattacgagctacatg
ctggctaatccgtcagttgggaagcttatttactgcacacgaactgtacatgagatggag
aaggttctagaggagcttcggaagttgcaggcttatcaggaaaaagctctcggtaaggct
gcgaaaatgcttgctctcggactgagctcccgaaaaaacctatgtattcaccctcaggtc
agcggggaaggatccagggagagcgtggatgcagggtgtaggaagttgacagcttcttgg
gtcaggagcttggctttggataatcctaatattgaattatgtccatattatgaaggctat
gagaaagggggcgccgatgcacttcttccatccggcgtatacaccttacatgacttgcgg
ggtttcgggcgggagaaacgatggtgcccatactttttggcccgtcacatgatccagttt
gcaaacgtggtggtatacaattatcaatatcttttagatcctaaagtggctggaatcatc
tcaaaagaaatggaaaaggagtgcgtggtcgtgttcgatgaagcccacaacattgacaat
gtgtgtatcgaggcattgagcgtgaacattcgacaacaaactctggatggtgccacgcgg
aatctcagtcaagttactcaacttattgagaaatctaaggctacagatgcaaatcggcta
cgtcaggagtacagcagattggttgagggtttagcccaacgcgggaacctagctggaacg
gacacatggttagcgaacccagcattaccacaagacatacttcaagaagcagttcctggt
aatattcgccgtgcagagcatttcgtagctttcttgaagcgcctagtgcagtacattaag
aaccggatgattactgagaaagtggagagcgagagtccggtttctttcgtaactgcactg
cagaatcaagctggcatcgatcagaagagtttgaaattctgttatgatcggctgcattct
ttgctgttgaccctagaagtgacaaacacagatgaatttatgtacattcaaactgtgtgt
gatttcgccacgcttgttggcacatatacaagagggttcaccattatcattgagccctat
gatgaacgcatgcccaatattccggatcctgtactgcagctgagctgtctggattcctcc
ctcgcaataaagccagtatttgagaaattccaaagtgttgtaatcacgtctggtactctt
agtccaattgatctgtatccgcgtttactgaatttccatccagtcatctcaaacagctat
aagatgactcttactcgtgactgcttatgccctatggttctcacacgagggagtgaccag
ctgcctgtcagcacgaaatttgatatgcggagtgatcctggagttgttcgcaattacggt
cgtctgctactagagatggtcactgctgttccggatggaatcgtgtgtttctttgtcagt
tattcctacatggatggaattgttaatagttggaatgagatgggtatattgcaggaagtt
atgcagcataagttggtcttcatagagacacaagatgtggtggagaccacacttgctctt
gataactacagacgagcttgtgattgtggtcgtggtgcagtcttcttctctgttgctagg
ggcaaagttgcagagggtattgattttgaccggcactatggtcgccttgtgattatgtat
ggtgtaccatttcaatacaccctcagcagaatattacgagctcgtttggagtatctgcga
gaaacttttcagattaaagagaatgatttcctgacgtttgatgccgtgcgtcaagctgca
cagtgtgtgggacgcgttattcgttctaaagcagattatggaatgatgatttttgctgac
aagaggtacaatcggcacgacaagcgatcgaaactacctgggtggattttgtcacattta
cgagaggctcacctcaacctcagtacagacatgtctgtccatattgcacgagagttttta
aggcgaatggctcagccgtacgacaaaactggaaaagggctcaacgcgacacttctctca
caggctgacctggagaaaatggagaaaaaatga
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