Physcomitrium patens (spreading earthmoss): 112288089
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Entry
112288089 CDS
T01041
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112288089
09123 Folding, sorting and degradation
03018 RNA degradation
112288089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112288089
03041 Spliceosome [BR:
ppp03041
]
112288089
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112288089
mRNA cycle factors
Stress granule specific factors
112288089
Spliceosome [BR:
ppp03041
]
Complex C
Other components
Complex C specific factors
112288089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_occluded
RRM_5
RRM_7
RRM_3
Nup35_RRM
DUF5062
Motif
Other DBs
NCBI-GeneID:
112288089
NCBI-ProteinID:
XP_024387706
LinkDB
All DBs
Position
10:complement(3379240..3383941)
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AA seq
643 aa
AA seq
DB search
MAQATAQPQAPAASGPAPTQFVSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLI
TRRSLGYSYVNYNNAQDATRALELLNFTGVNGKPIRIMFSHRDPSIRKSGTANIFIKNLD
KSIDNKALHDTFAAFGNILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDK
QVFVGPFVRRQERDQAGGVSKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDG
KSKCFGFVNFEHPDDAAKAVEALQGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERI
EKYQGVNLYLKNLDDTVDDEKIRELFAEYGTITSCKVMRDHQGQSKGSGFVAFSSPDEAT
RAVTEMNGKMVGNKPLYVALAQRKEERRMRLQAAFAQMRTHVGPAVPTSLPMYHPGAPGM
GPQMSYYGQHPPGPIPLQPTAYGFQPQIIRPGGAQIPNYIGYPNVPPRQGQQGQRAGGRR
GGAPQQPQQQMIQRGGNRNFRYIPNARNTPDVSVPPQGIINTMLPVPLEIGGAPAANVDP
GVPQQPLPISALASALASAPPDQQRAMLGEQLYPLVDQLEHDFAGKVTGMLLEMDQTEVL
HLIESPDALKAKVAEAMEVLRMAQAVPSAPTDQLGNLSISDSA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggctacagcacagccgcaggctcctgctgccagcgggcccgcgccgactcag
tttgtgtcaacttctctatatgtcggggacctggagcccaatgtgtctgaagctcaatta
tacgagatgttcagtcaggttgggcaagttgtatcgatccgggtttgccgtgaccttatc
accaggcgctccttaggatactcctacgtcaactataacaacgctcaagatgctactcgt
gccctggagttgctcaactttaccggtgtgaatggaaaaccaattcgtattatgttctcc
cacagagatccaagcattaggaagagtggtacagccaatatttttatcaagaatttggac
aagtccattgataataaggcgttgcacgacacgttcgcagcattcggtaacattctctct
tgtaaggtggcaactgatgcttctggccagtcgaaggggtacggctttgtccagtttgag
caagaggaatcagctcagaatgccatcgaaaaagtgaatggaatgctcttgaacgacaag
caggtgtttgttggtccttttgtgcgtcgccaggaaagagatcaggcaggtggagtttcc
aagttcaacaatgtgtatgtcaagaatcttgcagacgtcacaactgacgacgaattgaag
aaagtgtttggagcttggggtccaatcagcagcgctgtggtcatgagggacaacgatggc
aagtctaagtgctttggatttgtcaacttcgaacatcctgatgatgccgccaaagccgtt
gaggctctgcaaggcaagaagttcgatgagaaagaatggtatgtcggacgtgcgcagaag
aagtcagagcgggaagcagagcttagggcgaaatttgagcaagagcgcaaagagaggatc
gaaaagtaccaaggagtcaacttatacctgaagaatctggacgatacggtcgatgatgag
aagatcagagagctttttgcagaatacggaaccattacatcttgcaaggtgatgagagac
catcagggtcagagcaagggttctggatttgttgcgttttcatctccggatgaagcaacg
cgagcggtgactgaaatgaatggcaagatggttggtaacaaaccactatacgtagcctta
gcacagcgcaaggaagagaggaggatgagattacaggctgccttcgcacaaatgcgaact
cacgttggtcctgccgttccaactagccttcctatgtaccaccctggcgctccagggatg
ggtcctcagatgtcctactacggacaacatcctcctggtcctattccacttcagcctacc
gcgtatggattccagccccaaatcatcagacctggtggagctcagattccaaattatatt
ggatatccgaatgttcccccgagacagggacagcaaggacagcgtgccggaggaaggcgc
ggaggggcgcctcagcaaccacagcaacaaatgattcaacggggtggtaaccgcaacttc
cgatatattcctaatgcacggaacactccggatgtctctgttcctcctcagggcattata
aacactatgctacctgttcctcttgaaatcggaggggcaccagcagccaatgtcgatcct
ggcgttcctcagcagcctttgccgattagtgcccttgcttcggctttggcttctgcccct
cctgatcaacagcgtgccatgcttggtgagcagctttacccactggtggatcagctggag
catgattttgctggtaaggtgacgggtatgcttcttgagatggatcaaactgaagttttg
cacttaattgagtcgcccgatgccttgaaggctaaggtagctgaagccatggaggtattg
cgcatggctcaagcggttccgtccgcaccaactgaccaacttgggaacctttccatcagc
gattcagcatga
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