Physcomitrium patens (spreading earthmoss): 112289936
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Entry
112289936 CDS
T01041
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013
Nucleocytoplasmic transport
ppp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112289936
03015 mRNA surveillance pathway
112289936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112289936
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112289936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
112289936
NCBI-ProteinID:
XP_024391458
LinkDB
All DBs
Position
12:complement(15119080..15125066)
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AA seq
399 aa
AA seq
DB search
MAKLGGKSKAASPSVTSGSSSYSGSSSASGSRSRSRSSSSSGSETSRSRSPPAKSSDVAK
KTRASPPPPTKSSAPKKLRTPTPESTVLHVGCLTRNVNEAHLKEIFGLYGEIVHVELAMD
RTVNLPKGYGYVEFKRRGDAEKALAHMDGGQIDGNVVSAQFILVPRRKPTPPPVKRQVSP
APKREIVGREVPPRDGVKDGLRRRDSPPIRRGRSPSPPPRRRSGSPRRRMPDSPPRRRAP
AVSPRRRRSPSPFRRRRSPIRSPPRRIRGSPVRRPRSPPPYRRRSPPPGRRARSPPPRRS
PPRRRASRSPPPRRPLRSRSRSRSAPRRARSPINKRKRSTSYSTSPSPVKRVSPPGAKKF
LKSRSPKKAFANSSPSGRSSSPSPSKSSQALVNPITVSN
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcttggagggaaatctaaagcggcatcaccgtcagttacctctggatcatcc
tcctattcaggctcgtcgtcagcgtcaggttcacgatcaaggtcacgatcgtcttcatcc
tctggaagcgagacctccagaagtcgtagtcctcctgcaaaatcaagtgatgtcgcaaag
aaaaccagagcatccccccccccgcctacgaaatcatctgcaccgaagaaattgcgcact
ccgactcctgagtctaccgtattgcatgttggttgccttactcgcaatgtcaatgaggca
catttaaaagagatatttgggctttatggtgaaatcgtgcacgttgaactcgctatggat
cgcaccgtgaatttaccgaagggatatggatatgttgagttcaaaagaagaggtgatgct
gaaaaggcattggcccacatggatgggggtcaaattgatgggaacgtcgttagtgcccag
ttcatcttggtgccgaggagaaaaccaacacctcctcctgtaaagagacaggtttctcct
gctcctaagagggaaatcgttggacgggaagtgcctccacgtgatggtgtgaaggatggt
cttcgtcgccgtgactctccaccaattcggagagggcggtcgccatcacctccccctcga
agacgttccgggtctccccgcaggcgaatgcctgattcaccacctcgtagacgagctcct
gcagtatccccacgtcgccgtcgctctccttctcccttccgtcgacgccgttcacccatc
agatctccaccaaggagaatacgaggcagccctgttcgacgtccacgctctccaccaccg
tatagaagaagatctcctccacctgggaggcgtgcaaggtcaccaccacctcgcagatct
ccacctagacgccgtgcgagcagatctccgccgcctcgtcgaccacttcgctcacgctct
agatctcgttcagctccaagaagggcacgctctcccattaacaagcgcaagagatcgacc
tcttactctacgtctccaagccctgtgaagcgcgtttctcctcctggtgctaagaagttc
cttaagagtcggagccctaaaaaagcttttgcgaacagcagccccagcggtcgcagtagc
tctccatcaccgtccaaaagcagccaggccttggtgaatccaattaccgtcagcaactaa
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