Physcomitrium patens (spreading earthmoss): 112293536
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Entry
112293536 CDS
T01041
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112293536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112293536
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112293536
mRNA degradation factors
3'-5' decay
Pan complex
112293536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
Pkinase
zf-CCCH_4
zf_CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
112293536
NCBI-ProteinID:
XP_024398834
LinkDB
All DBs
Position
16:complement(1863332..1873824)
Genome browser
AA seq
1153 aa
AA seq
DB search
MSVSPQKPPVSNVTCRYWATSGTCFFGDQCNFAHNPADRAATGKSVPKREKACKELLLTG
YCKNEKNGCEYNHEIPGVIRAGPPASSTTAANVSTSVVYSSWSSTASSSLSSGAVAAIRN
HRLPVSAPAFVPAAVAAAQRASLSAWGGVTPGKCVAVTSQATSTTISTTQNDSLSVSSGQ
TSVVDTQTTSAPGSLVEEAEVSGNPDTISSGISVSTSLSSFSNSLLNAQPFIPSISSAIS
GSLNGPSPPYSGTTQGASVGSANATPFVPSGGSVASAVSAVPFVPRSRQHLVTGATTGGG
SSGMGWALQPVSSSLMALGGPAPQQQLQIRQHQLSQLQQQIQQQVAAQAQVQAQLQAQVQ
AQAQAQAHMLAAAARGISGSVLSNNQYMGMDMPTVLPSFRLPDGDDPALGMTAMSPPNPS
FSTRAQLLQHMQNMQLQQQHQAFSGQSSPYSLRSLQRTGAQTPEKQQQLLNSQSEVQQSQ
SPPYAIWLSQSLGTHTPEKSQPLALKADAGGSVSSSLALSNDNQVQEHVLPSTPERRESD
QLSVQSLEHIGPPQSPQQTGQIQSPQQQPTAVSQSSTKQQQQAQIQHQIQLQALQQQRMR
HRMQQQQQQQQQQQHFQQGQRVLTGTGLTQQRLPSVRSPSPISGSSPVAAATHGGATYFL
GPGQGISSLSHAFSSPVGRNESRTARSQFPAGTVPFGSRFLPDQLREELRRRHSLIHAQL
DPEQDLVDLPEMVQRFHSLYPLEDVNREDEIPSASFGVRTMLFKGISSSDGQAYAIRRID
SHQVIPTAELANTAVEVVERWAPFARHPHIVAIRESFVSREVEDSAALFFVHDYYPAALT
LQAIHLQQEQPSGVVHLTVNEEQLWSYMVQLATVLRAVHSAGLYFRPGGLHPSKVILTSK
GRIRVSGVGILDVLHGDPSDDPRMFQREDLAGCGRLILALACGSTANASLEFMGSHYSAD
LVRITQALLASSPEKSEGAGICSIRQLCSALADRMFNEIENVHMQNDENLNELSKETENG
RLLRILVKLGMINERPEHDMDPAWSEIGDRYLLKLFRDSVFHQTSEEGTPVIDWGHVVEC
LNKLDAGVPEKLILLSRDERSMLIASYADLKRCLENVYQELLVRASGDKARQAPPQNMLM
QSPVRLSQRLHVI
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtttcaccacaaaagccccctgtcagcaacgtgacttgtcgctactgggcaaca
tcagggacttgcttttttggtgatcagtgcaacttcgctcacaatcctgctgacagagct
gcgacaggcaagtctgtacctaagcgtgaaaaagcctgcaaggaacttcttctcaccggt
tattgcaagaacgagaaaaatggatgcgagtacaaccatgaaattccaggcgtaattcgt
gcagggcctcccgcgtcttcaacaaccgctgccaatgtgtcaacctctgtagtgtattca
tcttggtcttccacggcatcgtcttccctcagctctggggcagttgctgcaataaggaac
cataggttaccagtttctgctccagcatttgttcctgcagctgtagcagcagcccaaagg
gcttctttgagtgcttggggtggtgtgactcctgggaaatgtgttgcggtgacttcacaa
gccacttcgacaaccatttctacgacacagaatgacagccttagtgtatcttcaggacag
acatctgtggtcgatactcaaacaacctcagctccaggatcgttagtagaggaagctgaa
gttagtggaaatccagatacaatctccagtggtatctctgtgagcacctcgctcagctca
tttagcaattctttacttaatgcacagcccttcattcctagcatttcttctgcaataagc
gggagtttaaatggcccctcacccccatatagtggtactactcaaggagcaagtgttggg
agtgcaaatgcaacaccgtttgtgccatcagggggttcagttgcctccgcggttagtgct
gttccctttgtgccaagatcaaggcagcaccttgtgactggagcgacaacgggaggtgga
tcgtcgggtatgggttgggccttacagccggttagctcctccttgatggcgttgggaggt
cctgcacctcaacaacagctacaaattaggcaacatcaattgtcacagcttcaacagcaa
atacagcaacaagttgctgcgcaagctcaggtgcaagctcagttgcaagctcaggtgcaa
gctcaggctcaagcacaagctcacatgctagctgctgcagctcgtggtattagtggaagt
gtacttagcaataaccagtacatgggaatggacatgcctacagttttgccttcttttcgt
ttgcccgatggggatgatcctgcgcttggcatgacagctatgtctcctccaaatccatca
ttctcgaccagggcacaactactgcagcatatgcaaaacatgcaactgcagcagcagcat
caagcattctctggtcagtcatcgccctattctctacgttcgcttcagagaaccggggct
cagactcctgagaagcagcagcaactgttgaattcgcaatctgaggtgcaacaatctcaa
tcaccaccatatgcaatatggctgtcacaaagtttaggcactcatacccctgagaagtcg
caacctctcgctttaaaagcggatgcaggtggctctgtgtcatcttcattagcactctcc
aatgataatcaagtgcaagagcacgtgcttccctcaacccctgaaagacgagagtctgat
caactctctgtgcaatccttagaacatattggtcctccacagtcacctcaacaaacaggg
cagattcaaagtcctcagcagcagcccactgctgtgtctcagtcatcaacaaagcaacag
cagcaggcacaaattcagcaccaaatacaacttcaggcactacaacagcaacgaatgcgg
cacagaatgcagcagcagcaacaacaacaacaacaacaacaacactttcagcagggtcaa
cgagttcttactggcactggcttaacccagcaaaggttgccatctgtaaggtcaccttcc
ccaatctctgggtcttctccggttgcagctgcaacacatggaggagcgacttatttctta
ggtcctggccaaggcatcagcagcttgtcacatgcatttagctcacctgttggacgcaat
gaatcgcgtactgcaaggagtcagttcccagctggcactgtacccttcgggtcacggttc
cttccggatcagttacgtgaggagcttcgacgtcgtcactctttgatccatgcccagctg
gaccctgagcaagatcttgttgacctaccggagatggtacagcgattccattctttatat
ccccttgaagatgttaatcgtgaagatgaaattcctagcgcctcatttggtgtaaggacg
atgctttttaaaggaatctcttcgtcagatggtcaagcctatgccattcggcggattgac
agtcaccaggtgatacccacggctgagctggctaatacagcagttgaagttgtggaacgt
tgggcaccttttgctcgtcatcctcacattgttgcaattagggagtcctttgtaagtcga
gaagtggaggattctgcagctttgttctttgtgcatgactattatcctgctgcccttact
cttcaagcaattcacttgcaacaggagcaaccaagtggtgttgtacatttgacggtgaat
gaggaacagctttggagctacatggtgcaactggcgactgttcttcgggctgtacatagt
gctggcctatacttccgtcctggaggtttacatccgtcaaaagttatcctaacaagcaag
ggtaggatacgcgtatctggtgttggtatccttgacgttcttcatggtgatccatccgat
gatcctcggatgttccaaagagaagatttagcagggtgtggccgtctaatacttgcactc
gcatgtgggtcaactgctaatgcatcgttggaatttatgggatctcattattcggctgac
ctagttcgaatcactcaggctttgttggcctcatcccctgagaagtcagagggagcgggt
atctgcagtattcggcaattgtgctctgctttagcagatcgtatgttcaatgagattgag
aatgttcatatgcagaatgatgaaaacttgaatgaactgagcaaagagactgagaatggg
cgtctcttacgcatccttgtcaaattgggaatgataaatgagcggcctgagcatgacatg
gatccagcgtggtctgaaattggtgaccggtatctgctcaagctattccgggattccgtc
tttcaccagacatcagaggaagggacaccagttattgattggggccacgttgttgaatgt
cttaacaagttggatgccggagtccccgagaagttaattttattgagtcgtgatgagcgg
tcaatgctcattgcgtcgtatgctgacttgaagagatgcctcgaaaatgtctaccaagaa
cttctagtaagggcatctggagacaaggcaaggcaagcaccccctcagaacatgcttatg
caatcaccagttcgtcttagccagaggctacatgtaatctga
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