Pseudomonas protegens CHA0: PFLCHA0_c16150
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Entry
PFLCHA0_c16150 CDS
T02671
Symbol
recQ2
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLCHA0_c16150 (recQ2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprc03019
]
PFLCHA0_c16150 (recQ2)
03400 DNA repair and recombination proteins [BR:
pprc03400
]
PFLCHA0_c16150 (recQ2)
Enzymes [BR:
pprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFLCHA0_c16150 (recQ2)
Messenger RNA biogenesis [BR:
pprc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLCHA0_c16150 (recQ2)
DNA repair and recombination proteins [BR:
pprc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PFLCHA0_c16150 (recQ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_40
HTH_23
Sigma70_r4_2
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AGL83403
UniProt:
A0A2C9EIC1
LinkDB
All DBs
Position
1796756..1798882
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AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFPQVPRIALTATADKRT
REEIVNRLHLQDAERFLSSFDRPNIFYRIVPKEQPRKQLQAFLNERRSDAGIVYCLSRKK
VDEVAAFLCEQGFTALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEQHK
LDAMLALCEETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDTEKVRSFGHQHLSVFGVGKARSEGEWRSLFRQLVARGLADIDLE
GYGGLRLSDSCRPLLKGEVTLELRRDLKPQTTPKSSTSQASQLVRGEEREQWEALRALRR
KLAEEHGVPPYVIFPDSTLLEMLRSQPGSMAEMAEVSGVGARKLERYGAAFLEVLGGGVE
APKVVADLRHELITLARAGMTPVQIAGQLQCTEKNVYTLLAEAIGKQQLSLEQALDLPED
LLGEIQDAFLDGEGELPPVAEVIPVFAGRVPEGVLYCVRAALESEFEM
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagtttccgtggt
cgccaaggtgcgatcattgagcgcgtggccagcggcggcgatgccttggtactgatgccc
accggtggtggcaagtcgctgtgtttccaggtcccggcgctacttcgcgaagggctggcg
gtagtggtttcgccgctgatcgcgctgatggacgaccaggttgcgaccctggaggaactc
ggtgtcgcggcggcagccttgaactccaccctcagcgccgagcagcagcgtgacctggcc
gcgcgcatccggcgcggcgaagtgaagatgctctacctggcccccgagcgcctggtccag
ccgcgcatgctggcgtttctgcagagcttggaaatcgccttgttcgcgattgatgaagcc
cactgtgtgtcccagtggggccacgacttccgccccgaatacctgcaattggggcaactg
gcggaaatgttcccccaggtgccgcgcattgccctgactgccacggctgacaagcgcacc
cgggaagagatcgtcaatcgcctgcacctgcaggacgccgagcgttttctctccagcttc
gaccggccgaacatcttctatcgcatcgtgcccaaggagcagccacgcaagcagttgcag
gccttcctcaacgagcggcgcagcgatgccgggatcgtctattgcctgtcgcgcaaaaag
gtcgacgaagtggctgcatttctctgcgagcagggtttcaccgcgctgccctaccatgcc
gggttgcccaatgagctacgggcctatcaccagaagcgcttcctcaacgaagaaggcctg
atcatggtggccaccattgccttcggcatgggcatcgacaagcccaacgtgcgcttcgtg
gcccacatggacttgcccaagtcactggaagcctactaccaggagaccggtcgcgccggt
cgtgacggcctgccggcagacgcctggatggcttacgggctgcaggacgtgctgatgctc
aagcagatgctgcagaactccgagggcgacgagcgccacaagcgtcttgagcagcacaag
ctcgatgcgatgctggccctgtgcgaggaaacccgttgccggcgccagaccctgctggcc
tatttcgatgaagacatgccgcaaccctgcggtcactgcgacaactgcgtcgatggggta
cagacctgggacgccaccgagccggcacgccaggcgctgtcggcgatctatcgcactggc
cagcgctacggcgtcggtcacctggtggatgtgctgctgggcaaggacacggaaaaggtc
cgcagtttcggccatcagcacctgtcggtatttggtgtcggcaaggcccgcagcgaaggc
gaatggcgctcgctgtttcgccagttggtggcccgcggcctggccgacatcgatctggaa
ggttatggcggcctgcgcctgagcgacagctgccgcccgctgctcaagggcgaagtgacc
ctggagttgcgtcgtgatctcaagccgcaaaccacccccaagagcagcaccagccaggcc
agccagctggtacggggcgaggagcgcgagcagtgggaagcgctgcgggccctgcgacgc
aagctggcggaagaacatggggtgccgccttatgtcattttccccgattccaccttgctc
gaaatgctccgcagccagcccggctccatggccgaaatggccgaggtcagcggcgtgggt
gcgcgcaagctggagcgttatggcgcagccttcctcgaagtcctcggcggcggtgtcgag
gcgccgaaagtggttgccgacctgcgccatgaactgatcaccctggctcgtgcggggatg
accccggtgcagatcgccggccagttgcagtgcacggaaaagaacgtctacaccctgctc
gccgaagccatcggcaagcagcagctgtcgctggagcaggccctggacttgccggaagac
ctgctgggagagatccaggatgcgttcctcgacggcgagggcgagttgccgcccgtggcc
gaggttatcccggtgtttgccggaagggtgccggaaggggtgctgtattgcgtgcgtgcg
gccttggagtcggagtttgaaatgtga
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