Poeciliopsis prolifica (blackstripe livebearer): 129352336
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Entry
129352336 CDS
T09758
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04510
Focal adhesion
pprl04512
ECM-receptor interaction
pprl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129352336 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129352336 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129352336 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprl04147
]
129352336 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129352336 (col4a6)
Exosome [BR:
pprl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129352336 (col4a6)
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129352336 (col4a6)
BRITE hierarchy
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129352336
NCBI-ProteinID:
XP_054877262
LinkDB
All DBs
Position
Unknown
AA seq
1702 aa
AA seq
DB search
MKFLICVLTVSCALRSTHGGETSDEPCAGLDCSRGCKCFPEKGSRGRPGQMGEIGRPGPD
GPRGGLGPQGPKGEKGHIGVKGPSGVKGDKGPMGVPGFRGTDGVPGHPGQQGSRGPPGKD
GCNGTMGDPGLPGYGTGAPGYPGFQGPPGPKGQKGDPIYIGEGTPGPPGPRGPPGLRGPT
GPPGFQGPRGINGFPGPPGPPGPQGPEGSRGDIYRGGKGDKGDVGLPGPGGSPGDRSLSG
EKIVTAYKGDKGDPGPKGIKGYPGSPGPPGPFGYRGEDGEQGILGYPGPRGPTGFVGPPG
PSGPKGTTGELGFPGQPGFLGPKGDQGDTGLPGPPSYINDYGSFVQGPPGDPGFSGPPGS
TGDQGPPGFIGPPGPPGAFRIGPPGAPGFPGGAGPKGDKGNPGIPLPGPEGFQGPPGPDG
PPGPPGPPGPRDSSGRPRDPCDIYPPDRPTDAPTRGRPGIPGPPGQRGFPGDSGVKGFRG
DFGDCNCGGGGGRGLPGLPGPQGPRGSFGFQGRKGEPGNLGTPGFNGNPGAPGRVGERGF
NGRKGQKGESSFRSFGVKGDRGAPGPRGPTGETGNPGRDGLPGFSGPPGPPGDGGVGTIG
EKGFPGFPGAKGRRGAPGDPGFGYPGLPGLQGDKGEPGIPGFPGQPGPPGPRGDNSCGGV
IGAGEGTGDRQPCIIYGEPGDKGYPGGPGRPGPAGQPGFPGSPGGRGFDGPKGEKGDPGF
GGQPGPQGFPGPRGDPGVPGTPGVGYDGPRGKDGLPGLPGPKGPPGEVLGVRPGAPGLDG
VPGPTGDKGLPGSPGTPGSPGFDGRPGVSGLKGERGVDGRPGFPGLPGLPGGATNPIPGP
PGFPGSKGLIGPPGCPGYRGRKGEPGDRGFPGPAGMKGTPGLPGVNGGTGPRGPPGLPGP
GTIPGRPGAPGRKGERGLPGLIGFPGLPGRPGSPGFPGGKGFPGDRGRDGFPGGPGRFGP
KGDQGNPGPPGLPGPVPFVQKGPPGAAGAPGFQGFTGPRGDKGLPGLPGRPGSPGRPGFP
MDSKGQAGQLGFPGQPGPQGFPGRKGEGGIMGFPGMTGPRGEDGSPGFPGSPGEFGRNGG
KGPPGETFAYPGGPGVKGQPGNPGFPGPRGLDGSLGDSGFLGLRGSDGQKGISGDTGRPG
TMGPPGFPGPQGQPGFPGRQGPDGSPGLPGGPGGLGFKGLSGAPGLDGLNGLAGPKGPPG
IPGTTIGGNPGLRGAQGQKGERGVSFPGRRGFPGSKGQRGDSGAFGAPGFPGRPGPPGPS
TSGNFPGPVGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDTGDPGLPGFPGTPGPKGET
GSPGGPGFPGFPGLKGAPGDNGRGGASGAKGLPGEPGFFGFKGRRGSPGRPGRKGPPGAP
LPYIPRPAPVGDPGVPGYNGPPGGPGEPGQPGFSGRPGLKGRPGAGGELGRTGSPGFSGQ
VGDSGIPGFPGITGDQGFPGAIGRPGIPGGVGRSVSVGYTLVKHSQTTDVPMCPQGMAQL
WVGYSLLYVEGQEKAHNQDLGQPGSCLPRFNTIPFLYCNPSETCYYASRNDKSFWLSTTA
PIPMMPVAEEQIRPYISRCSVCEAPSQAVAVHSQDLSIPTCPLGWRSLWIGYSFLMHTAA
GAEGGGQSLMSPGSCLEDFRSTPFIECNGARGTCHYFANKYSFWLTTVDPRLEFGAPTEQ
ETLKGGQERSRVSRCQVCSKIL
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatctgtgtgctgactgtctcctgcgcgctgaggtctacgcacggaggt
gaaacgtctgacgaaccgtgcgcaggcctggactgcagcagagggtgcaagtgcttccca
gagaaaggcagcaggggtcgtcctgggcaaatgggtgagatcggacgtcccggaccggat
gggccacgcgggggcctagggcctcaagggcctaaaggagagaagggccatatcggagtt
aaaggtccatctggggtcaaaggagacaaaggaccaatgggagtgccgggatttcgagga
actgatggagtgcctggtcacccgggtcagcagggcagcaggggcccgccagggaaggac
ggctgtaacgggaccatgggggaccctggcctgcccggctatggcacgggcgctccagga
tatcccgggtttcaagggccaccggggccaaaaggtcagaaaggagaccccatctacatc
ggtgaggggacaccaggtccaccaggacccaggggcccacctggtctcagaggtccaacc
ggcccgccgggtttccaaggtccaagaggaattaacggattccccggacccccaggccct
ccagggccccaagggccagagggcagccgtggcgacatttatcgaggagggaaaggagac
aagggcgatgtgggtcttcccggacccggcggttctcccggtgaccggtctctaagcggc
gaaaaaattgtcactgcctacaaaggagacaagggtgatcctggcccaaagggcataaaa
ggataccctggatcacctggaccacctggacctttcggttatagaggtgaagacggggag
cagggcattcttggatacccaggaccaagaggtcctacgggttttgtcggaccgcctggc
ccttctggaccgaaagggacaacgggggaactgggtttcccgggacaaccaggattcctt
ggacccaagggagaccaaggtgacactggactcccaggacctccaagttacatcaatgat
tatggctcttttgttcaaggacccccaggcgacccgggcttttccggccctccgggtagc
accggtgatcagggacctccaggattcatcgggcctccaggaccgccaggcgctttccgc
attggtcctccaggagctccgggctttcccggtggcgccgggccaaaaggagacaaggga
aacccgggcataccacttcccggccctgagggtttccaaggtccccctggacctgatggt
cctcctggtccccctggtcctccaggtcctcgagacagctcaggccggcccagggacccc
tgtgatatctatcctcctgacaggcccacagacgcccccacaagaggccgtcctggaatc
ccagggccgcctggccagagaggatttccaggagactcgggagttaaaggctttagaggt
gactttggtgactgtaactgtggaggaggaggagggagaggcctgcccgggttacctgga
cctcaaggaccaagaggaagcttcggcttccaagggcgtaaaggtgaacccggtaacctg
ggtactcctggtttcaacggcaatccgggggcccctggtcgtgtgggtgagaggggattc
aacgggcgtaaaggacagaagggggaatcgtccttccgcagtttcggggtgaagggagat
cgaggggcacctggacccagaggacctacaggtgaaacaggaaaccctggccgtgacggt
ctgccgggcttctctggacccccgggaccgccgggtgatggtggtgttggcacaatcggt
gagaagggtttcccaggatttcctggagccaaaggtcgacgcggtgcccctggtgatcct
ggattcggctaccccggcctaccgggccttcaaggtgataaaggagagcctgggatccct
gggtttcctggacagccaggtccaccaggcccgagaggtgacaacagctgtggaggggtt
attggcgccggagagggaacgggtgataggcaaccttgcatcatatatggtgaacctgga
gacaaaggttatcctggcgggcctggacggccaggccccgcaggtcagccaggcttcccg
ggatcccctggaggtcgagggtttgatggccccaagggagagaagggagatcctggtttt
ggaggccaaccaggaccacaaggttttcctggacccagaggagatcccggagttccaggt
actccgggagttggctacgacgggcccagggggaaagacggccttccaggactgcccgga
cccaaaggcccgcctggagaagtcctgggagtaagacctggagctccaggactggatggc
gtacctggtccaaccggagacaagggcctgccagggagtccaggaacacccggatcaccc
ggcttcgatggacggcctggtgtttccggtctgaagggggagcgtggagtggatggccgg
ccgggttttccgggtcttcccggacttccaggtggagcaaccaatcctatccccggtcca
cccggatttcccggcagcaaaggactcatcggaccaccaggctgcccaggttaccgcggc
cggaaaggtgaaccgggagatcgaggattcccgggccccgctggaatgaagggaaccccg
ggactccctggtgtcaacggaggaacaggtccgaggggaccccctggactgccaggcccg
ggaaccattcctggaagacccggagcgccgggaagaaagggtgaaagaggactcccggga
ctgataggtttccccggactaccgggtcgtcccgggagtccgggatttcccggcgggaaa
gggtttcccggagaccgtgggagagatgggtttcctggcggtcctggacggtttggaccg
aaaggtgaccaaggaaaccccggccccccgggccttccaggccctgttccttttgtgcag
aaaggcccaccaggggccgccggagccccgggctttcagggctttactggacctagaggt
gacaagggtctcccaggcctgcctgggcgtccgggttctccgggacgtcccggcttcccc
atggacagcaaaggccaggccggacagctgggtttccccgggcagcccggcccacagggt
ttccctggaagaaagggggaaggaggaatcatgggattcccgggcatgactggaccgagg
ggtgaagacggctcaccgggattccctggaagtcctggagaattcggtcgaaacggagga
aaaggtccacctggagagacgtttgcctatcctggaggaccgggagtgaaaggccagccg
ggaaatccaggttttccgggccctcgaggcctcgacggttcccttggcgacagcggcttt
ctgggactgcgtggctccgatggacaaaagggcatttccggtgacacggggcgtcccgga
acgatgggtccacctgggttcccggggccgcagggtcagcccggattccctgggagacaa
ggaccggacgggtccccgggactgcccggaggtccaggtggcctcggttttaaaggtttg
tctggagcgccggggctggatggactcaatggcctcgccggtccgaaaggcccgcctgga
atcccaggtacaacgataggaggaaacccaggcctccgcggtgcgcaggggcagaaagga
gagagaggtgtttccttccctggacgacgaggcttccctggatcaaaaggacagagagga
gattcgggagcttttggagcgccagggttccctggacgacccggacctcctggtccgagt
acttcaggaaacttcccggggcctgtgggagaccccggacttcctggattggatggagaa
tacggtttccagggccctcccggtcctcctgggccaccgggtcccggcacagcacaggga
gacacgggagacccagggctcccaggattccctggaacccctggcccgaagggagaaaca
ggaagtcccggaggtcccggattccccggattccctggcttaaaaggagctccgggtgac
aacggacggggcggtgcttcgggtgcgaaaggattgcccggagagcccggattctttgga
ttcaaagggcgtcgaggatcaccggggcgacctgggcgtaagggtcctccaggagcccca
ctgccttacataccgcgacctgcacctgttggagaccctggtgtccccggctacaacgga
ccacccggtggtcccggagagcccggccagcctggtttcagcggacggccaggtctaaag
ggtcgtccaggcgctgggggtgagctcggcaggaccggatcgcccggtttttctgggcag
gttggggattcgggcatccctggtttcccagggatcactggagatcaaggttttcccgga
gccatcggtcgtcccggtattcccggcggcgtcggccgcagcgtcagcgtcggctacact
ctggtgaagcacagccagaccaccgatgttcccatgtgtccccaaggcatggcccaactg
tgggtaggatacagcctgctgtacgtggagggacaagagaaggcacacaaccaagacctt
ggtcagccgggctcgtgcctccccaggttcaacaccatccccttcctctactgcaacccg
tctgagacctgctactacgcgagccgcaacgacaaatccttctggctctccacgaccgcg
cccatccccatgatgcctgtggccgaggaacagattcggccttacatcagcaggtgttcg
gtgtgcgaggcgccgtctcaggcggtggcggtccacagtcaggacctatccatccctacc
tgcccactcggctggaggagtctttggatcggatattccttcctcatgcacacagcagcc
ggcgctgagggcggcggtcagtccctgatgtctcccggctcttgcctggaagacttccgc
tctaccccgttcatcgagtgcaacggcgccaggggcacctgccactacttcgccaacaag
tacagcttctggctgaccacagttgacccccggctggagttcggcgcgccgacagagcag
gagaccctgaagggcggtcaggaacgctccagggtcagccgctgccaagtctgcagcaag
atcttgtag
DBGET
integrated database retrieval system
