Poeciliopsis prolifica (blackstripe livebearer): 129357571
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Entry
129357571 CDS
T09758
Symbol
col7a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Motif
Pfam:
Collagen
fn3
VWA
Kunitz_BPTI
VWA_2
DUF4992
Pur_ac_phosph_N
VWA_3
Motif
Other DBs
NCBI-GeneID:
129357571
NCBI-ProteinID:
XP_054882675
LinkDB
All DBs
Position
Unknown
AA seq
3073 aa
AA seq
DB search
MRSWVFTVAVLLSSITLADAQGRCDNVQAADIVFLIDGSSSIGRANFLQVKGFMAGIVKP
FASFVSDSGIRFGAVQYSDTSRVEFTFNTHLTGTDVVNAVQNMNYKGGNTRTGAGLKYVS
DNFFNPTSTRDVPKVTILITDGKSQDQVQEPAQKLQSQGVNVFAVGIKSADRNELAQVSS
KPSSDFTSFVGDFKLLNTLLPLVSPRVCSAAGGVYASDEAFSGPSNLQFTAQTTDSLRFR
WSPAGGPVSGYAIQYVPLSGLGQPIVAELRQESVSASQRTFTAQDLRSGTDYLVTVIAQY
PNSVGESVSAKQRTRSLPGVSSLRLVQAGYFSLSIQWDQPSTPVQGYRLTYGPRGQPAAQ
LLEQSLSADTSSVTLESLLPDTEYVINLYPLFSRNGASPSVLNTRTLSLEAVQQLTVETV
SEGSIRVRWRRVSGAQAYRLVWGPFTGRSVETVEVAGDTELYTLSSLQSDVEYIVTIIPL
YEGKTEGPRATARFKIERQEQQFLRAVSTGPSSIRLNWRQIRSAQGYRLEWRAGDGSPPQ
TLSFPQSSTSYELTGLRPKTEYIFQLYTLYEGREEATPVSTENIDDQPIGSVSNLRVVES
LGSTVRIGWTGVAGATQYRIVILNTEDGTESVQVIPGNQTTLDLRDLTVGVSYGVSVTAL
VRTNEGETITVFIKPEPAAGRVANLRVTNANSRRIRIAWQGVTGASGYRVTWRQGNNAEL
SRLLGADSTFYTIDGLQPDEAVVIGVAPIVNQRVGEVVTVSSRTNPSTGALSGLRATEVL
SQRTRIAWSSFSRATGYKIVWRHEDGTETTQIVAADVSSYIIDGLQPNSAYTVQVSALFG
SREGSPAILSIRTESDQSVVGTVTSLKVQEARGEAVRVSWVGVQGATAYRIIWRRVDGGE
ERSQLVGRDVSFLDLDQLDPGVQYEIQVIALVENREGLPASARVTTPGYVTPPTTLPTTS
LRATEVNQDSVRLSWALLTGATGYILRWKEETDVGRGLSVTLPPSSSSYLVTGLRLGRRY
RFTIQPTFAGGVSPETFVDERTVCLGGRLDVVFLVPASTDRSDLVRPLRDIVTSAAGSLA
AIGPRDSQVGVVVYSFRPKIWFLLNRHSRSDTLLQEIQSTPFDESPGNNIGEAVRFTRQY
LLTPSAGRRPRVPGVVVIIADRKSVDNLTLAASSLRDAGVTVLAVGIGQADMEELRRAVT
DRSPQNILYAGNAERLNTLHPDLADLLCGIARIPEVTPEKCTIQCPRGEKGDRGETGERG
RDGADGHKGEPGRDGLPGREGPRGPEGRPGTPGQTFPIDPSQLIKGEKGERGFPGVDGNP
GLPGRPGAPGNAGVPGSQGLPGVRGSPGEPGGQGTPGSKGNKGERGEPGSSVPTGGLPGR
KGEPGIPGIPGGPGRPGTDGAKGDQGVPGRSGQDGRPGIPGTPGLSIKGDKGSQGERGPP
GVGSGVAVKGEKGSPGIPGTPGGPGLRGPAGPQGSRGEKGEDGAGLPGPPGKQGEPGDRG
PRGPAGEIGSKGDRGKPGEPGTRGDRGERGPAGETGEKGDSGKAGIPGSPGLRGLPGPSG
PAGEKGNEGARGEPGRSMAGLPGKKGEQGERGLPGSEGLRGEKGEPGQRGEKGSPGSGGS
GVLGPKGEPGERGLAGLNGRPGAKGDPGEAGERGENGRPGIPGKPGLPGKQGEKGDKGDE
GTPGESGLPGKQGERGLRGLAGQPGRPGEKGDMGDPGEQGRNGSPGPAGLRGEKGELGPQ
GPAGPPGKWXADIQGQLKGERGEKGDAGDPGEHGGKGQKGEAGTPGAPGLRGPEGQRGPA
GIKGDIGERGSPGEKGDRGASGLDGRPGLDGKPGSPGPPGSRGDPGKQGDAGRDGLPGLR
GEQGAPGPVGPPGNPGIPGKAGEDGKPGPVGKIGEDGVPGEDGRKGDKGDAGASGRDGRD
GQKGDRGPAGPSGPSGPQGPVGLPGQVVYVKGVEVAPIPGPPGPPGTPGVPGIPGAVGAR
GERGPAGPKGDAGDPGEDGAPGKPGTAVDVQKALSGLGILVSDLKVLVDKKDAVLSTAAQ
KVEKGDKGDRGEPGLRGPSGADGARGFQGDRGPKGEQGERGPVGQTGPPGRATLERGPEG
PAGPAGEPGKPGIPGVPGRAGELGESGRPGEKGERGEKGDKGNAGIIGLTGPAGPPGQKG
DSILAGTPGPRGLPGVKGEPGVAGPIGPKGERGFVGPRGDKGDRGDPGDKGREGSMGVPG
EPGKPGQDGKPGSTGPPGPRGQPGNPGEPGMRGPTGPMGPAGIPGPPGVKGNQGEAGIGV
QGPPGAQGSTGLPGPPGPPGAVGPQGPPGLPGQVGEAGKPGVPGRDGVPGKEGIPGLPGK
QGIAGPPGLAGFKGEQGDSGPPGKAVAGPVGPKGDRGPPGVTLPGTTGERGPPGEKGNKG
DKGPAGIKGESGVAGEQGEQGEDGAPGSPGPKGDKGEKGLGQPGPLGRVGPQGLKGDPGL
PGPAGPPGPQGKAGDPGLSGVRGENGQPGPPGAPGERGLQGFAGRAGNPGPPGPAGPAGQ
PGSAGTNGVKGDKGEVGVGVPGPRGERGDSGPRGEEGRAGMDGDRGPVGPPGIRGLRGEK
GDGGLPGEKGDKGDTVLVGGPPGEKGNKGETGDRGVKGAQGEKGTKGQEGPSGEQGQRGE
PGERGSTGFPGARGPGGQKGEAGDPGVPGESGLPGKDGLAGRKGDKGEVGVSGLRGIKGD
RGPKGACGSDGPKGEKGDSGIHGRSGLPGRKGEQGDIGPAGAPGTPGKEGLVGPKGDRGF
DGAAGPKGTQGEKGERGPSGIPGPPGPRGADGAPGLTGPQGLAGPKGPEGLQGQKGERGP
IGPAMVGPRGIPGIPGERGEPGDMGPDGAKGDRGEPGMTEDEIREYVRAEMKQHCACGGS
GPDTRSQPTLRARPTTEQELVLNGEKGRELRVVVNTNDPEYEHIYSIEALDDPRDDMLYF
STESANLTEGEDFKTKAAKADSSKSSGTAGSHKTAARQKQMEIPPLSADKSRSGRPKRAV
QEEGLTDLCLLPMDEGSCQKYTLRWYFNNQVQACRPFIYSGCKGNDNRFHHLEECEQACL
RETEDPHSLQTAR
NT seq
9222 nt
NT seq
+upstream
nt +downstream
nt
atgaggagctgggttttcactgttgctgtcctgctgtcctccatcacacttgctgacgct
cagggaaggtgtgataatgtacaggcagcagacatcgtgttcctgattgatgggtcctcc
agtattggccgcgcaaacttcctgcaggtgaagggcttcatggctggaattgtaaagcct
tttgccagctttgtcagcgactcagggatccggtttggggctgtgcaatacagtgatacc
tcaagggtggagttcacctttaacacacacctgacaggcactgacgttgtcaatgcagtg
cagaatatgaactataaaggtggaaacacacgcactggagctggtctaaagtatgtttct
gataatttcttcaacccaacctccacccgcgacgtcccaaaggttaccattctgatcact
gatgggaaatcacaagaccaagtgcaggaaccggctcagaagctgcagagtcagggagtg
aatgtttttgcagtcggaatcaagagtgcagacaggaatgaactggctcaggtttcctca
aagcccagcagtgatttcacctcgtttgttggcgacttcaagctgctgaatacgcttctt
cctcttgttagcccccgagtgtgctcagcagcaggaggagtctatgcaagtgacgaggcc
ttttctggtccatctaatcttcagttcacggcacaaacgactgattctctccggtttcga
tggagtcctgcaggaggccctgtgagcggctatgccatccagtatgtgccactttctggt
ctgggtcagccaatcgttgcagaactgcgccaggaatcagtctcagccagtcagaggact
ttcactgcacaagatctcaggtcaggaacagactacctggtgactgtcatcgctcagtac
cccaatagtgttggagagtccgtatccgcaaagcagcgaaccaggtcactaccaggagtg
tccagcctacgcctggttcaggcaggctacttctccctctctatccaatgggatcaacct
tcaactcctgtccagggctacaggctcacctatgggccacgaggacaaccggcggcccag
ctgctggagcagtctctgtctgcagatacctcctctgtcaccttggagtctcttctgcct
gacacagagtatgtcatcaacttgtaccctctgttctccagaaatggtgcatccccgtct
gtcctcaacactcgcactttgagcctggaggctgtgcagcagttgacagtggagacggtg
tctgagggcagcatccgtgtcagatggagacgagtcagtggtgcacaagcgtaccgtttg
gtatgggggccattcacaggtcgtagcgtggagactgtggaggttgctggtgacactgag
ctctatactttgtccagcttgcagtcggatgttgagtacattgtcaccatcatcccactg
tatgagggcaagactgaggggccccgagctacagccagattcaagatagaacgtcaagaa
cagcagtttctcagagcagtatccacaggaccctcctcaatccgcctcaactggagacag
atccggtccgctcaaggctaccgcctggagtggcgggcgggagacggaagtcctccccag
accctctcctttcctcaaagctccaccagctacgagctaacgggtctccgaccaaaaact
gagtacatcttccagctgtacacgctgtatgagggccgtgaagaagccacacctgtctcc
actgaaaacatagacgatcagccaataggaagcgtgtccaacctgagagtggtggagtca
ctggggagtacggttcgaattgggtggacaggcgtggcgggggccacacagtaccggatt
gttatcttgaacacagaagatggaacagagtccgtccaagttattcctggaaaccaaacg
acccttgacctcagagatctgacagtgggtgtgtcatacggggtcagtgtcaccgcactg
gtgagaacgaacgaaggcgaaaccatcaccgtcttcatcaaaccagagccagctgcaggg
agagtggccaatctcagagtaacaaatgcaaacagccggagaattcgcatcgcttggcag
ggtgtcactggtgcatcgggatatagagttacttggaggcaaggcaataatgcagagttg
tctcgtcttctgggagcagactctacgttttacacaatcgatggcctgcagccggatgag
gctgtggtaatcggtgttgcccctatcgttaatcagcgtgttggcgaagtcgtcactgtg
tcttcaaggacaaacccctctactggagctttgtctgggcttcgtgccactgaggttttg
tcacaaaggacacgcattgcgtggtcatctttttctcgagctactgggtacaagatcgtt
tggcgccatgaagatggaactgaaacaacacaaatcgtagctgctgatgtctcctcctac
atcatagacggccttcagcctaactcggcttacactgtgcaggtttctgccctttttggc
tcccgagaaggaagtccagctatcctcagcattagaacagaatcagatcagtcggttgta
ggaactgtgacgtcgctaaaagtgcaggaagcccgaggggaagctgtgcgggtctcctgg
gttggtgtgcagggagcaacagcttatcgcatcatttggaggagagttgacggtggggaa
gagcggagccagctggtgggccgggatgtgagcttcctggatctggaccagctcgatcct
ggagttcagtacgagattcaggtcatcgcgttagttgaaaacagggaagggttgcctgca
tctgccagagtcaccacacctggttatgtcaccccccctaccacgctaccaaccacaagt
ttacgagcgaccgaggttaaccaggattctgtgcggctgagctgggctctcctcacgggc
gccacaggatatattcttcgctggaaagaggagacagatgtcggccggggtctgtccgtc
acattgcctccgtcgtctagctcgtacctggtgaccgggctgcgtttgggccgcagatac
agattcaccatccagcccacctttgcaggcggagtttcacctgagacttttgtagatgaa
cgcaccgtgtgtctgggtggccgtcttgatgtggtgtttcttgtgcctgcgtccaccgat
cggtctgaccttgtgagacctctgcgggacattgtcaccagtgcagcagggtctcttgca
gctatcgggccccgagactcacaggtaggggtggttgtatacagtttcagacccaagatc
tggttcctgctcaatcgtcattcaagatctgacacgctgctccaagagattcagtctaca
ccctttgatgaaagcccagggaataacattggtgaggcagtgaggttcacccgacaatac
ctgctgaccccctcagctggacggagacccagggtgcccggggtggtcgtgatcattgct
gacaggaaatctgtggacaacctgaccctcgcagccagcagtctgagagacgcaggtgtg
acagtgctagctgtgggaataggccaagccgacatggaggagctgcggcgggctgtgacg
gatcgaagcccacagaacatcctgtacgccggtaacgcggaacgactcaacactctgcac
cctgatctggccgacttgctttgtggaattgccagaatcccagaggtcactccagagaag
tgtaccatacagtgtcctcggggtgagaagggagatcgcggcgagacgggtgaaagaggc
agagacggtgcagatggacacaagggcgagcctggtcgtgacggtttgccagggagggaa
ggtcccagaggtcctgaaggacgtccaggaacaccaggacaaacgttccctattgaccct
tctcagctgataaaaggggaaaagggggagaggggctttcctggagtggatggaaatcca
ggattaccaggaagaccaggagctcctggaaatgcaggtgttccgggctcccaaggtctc
cctggggtcagaggaagcccaggcgaaccaggaggacaaggcacgccagggtcaaagggt
aataaaggtgaaaggggtgaaccgggttcctctgtgcccactgggggtcttccagggagg
aagggagagccaggcatcccaggaataccaggtggtccaggtcgaccaggtaccgacgga
gccaagggagaccaaggagttccaggtagatcaggtcaggacggtcgccctggaattcca
ggaacgccgggactttccattaagggagataagggcagccaaggagagaggggacctcca
ggagtgggaagcggcgtggccgtgaagggtgaaaagggctcccctggcattccagggacg
cctggtggcccggggctgaggggtccagcagggccacagggcagcagaggagaaaagggc
gaagatggggccggcctacctggacctccaggaaagcaaggagagcccggggacaggggt
ccccgcgggcctgcaggtgagatcggcagcaagggagaccgaggaaagccgggtgagcct
gggacacggggagacaggggggagcgagggcctgctggggagaccggagagaaaggagac
tcagggaaggcaggcatcccaggatcaccaggcctgagaggtttaccaggcccaagtgga
cctgcaggagaaaaggggaatgaaggagcacgaggggagccgggcagaagtatggcgggt
ttaccagggaagaaaggagaacagggggaaagaggtctgcctggatctgaaggcctgagg
ggggaaaaaggagaaccagggcaaagaggagagaaaggttctccaggttctggagggtca
ggtgttcttggacctaaaggagagccaggagagcgaggacttgcaggtcttaatggacga
ccaggagccaagggagacccaggagaagcaggcgagaggggagagaatggacgcccagga
atcccaggaaaacctggcctgcctggaaaacagggagaaaaaggtgataaaggtgatgaa
ggcacacctggagaatctggacttccaggaaaacaaggagaaagaggtttgcggggactg
gctggtcagccggggcggccaggagagaaaggagacatgggagatccgggagagcaggga
agaaatggcagccctggacccgccggactgagaggagagaaaggagagctaggacctcaa
gggcctgcagggccaccgggaaagtggtgagctgacatccagggtcagctgaaaggagag
cgaggggagaagggtgacgccggtgaccctggagagcatgggggcaaaggtcagaaaggg
gaagcagggactcctggagctccaggcctgcgaggtccagagggacagagggggccggca
gggataaaaggtgacataggagaaaggggatcgcccggagagaagggagacagaggagca
tctggcttagatgggcgtcctggtctggatggtaaaccgggctctccaggaccacccgga
tcaaggggtgatcctgggaagcaaggtgatgctggaagagacggattaccaggattaaga
ggagagcaaggtgcccctggtcctgttggtcctccaggaaatccaggaatacccggtaaa
gcaggtgaagatggaaaacctggtcctgtgggcaaaataggcgaggatggagtgccaggt
gaagacgggagaaagggtgacaaaggagacgccggagcctctggaagagatggccgtgat
gggcagaaaggggaccgtggtcctgctgggccctcaggcccctctggaccacaggggcct
gttggattacctgggcaggttgtatatgtaaaaggtgttgaggttgcacccatcccaggt
ccaccggggcctccaggaacgccgggtgtgcctgggattccaggagcagtgggagccaga
ggagagcgaggtccggcgggtcctaaaggagatgctggagacccaggagaggacggggct
cctggtaaacccgggacagcagtggatgtacaaaaagctctgtccggcctcgggatactg
gtgtcggatctgaaggtgcttgtggacaagaaggacgcagtgctgtctactgctgcgcaa
aaggttgagaagggtgacaaaggagacagaggggagccagggttgagaggaccatctgga
gcagatggcgctcgaggttttcaaggagataggggtccgaaaggagagcaaggggagcga
gggcccgtgggacaaactgggcctccaggaagagccaccttagaacgaggaccagagggt
cccgcagggcctgctggggagcctggcaaaccgggaataccgggtgttccaggtagagca
ggggaacttggagagtctgggaggcctggagaaaagggagagcgaggggagaaaggtgac
aaaggcaacgctggcataattggattaacaggaccagctgggcctccaggtcaaaagggg
gattcgattttggctggtactcctgggcctcgaggccttcctggagtgaagggagagcct
ggtgttgcaggaccaataggacccaaaggagagagaggttttgtgggacctcgaggtgat
aaaggagacagaggagatcctggagataaaggacgcgaaggttcaatgggtgtgccaggg
gaacctggaaaacctggacaggatgggaaaccaggctctacggggcctcctggtcctcga
ggccaaccaggaaacccaggagagcctggcatgaggggaccaactggacccatgggtcct
gctggcatcccaggtccaccaggtgtaaagggtaatcaaggagaggcaggcatcggtgtc
cagggtcctcccggtgctcaagggagcacaggtctgcctggaccaccaggcccaccagga
gctgtcggtccgcaaggccccccaggactgccagggcaggtgggtgaagcggggaagcct
ggtgttcctggaagagacggggttcctgggaaagaaggaattcctgggttacccggaaaa
cagggtattgcaggacctccaggtctggctggctttaagggggagcagggagacagtggt
cctcctgggaaggctgtggctggacctgttggtcctaaaggagacaggggtcctccgggt
gtgacgctgccgggcacgactggagagcgaggcccacctggagaaaagggcaacaaggga
gacaaaggccctgctggcatcaaaggagagagtggagtggctggtgagcaaggagagcaa
ggagaggatggagcaccaggatcaccaggccctaaaggagataagggagagaaaggtctt
ggacagccaggtcctctcggtcgagtcgggcctcagggtttaaagggcgatccgggtctt
cctggtccagctggcccaccgggcccccaagggaaggctggagatcctggactgtccggt
gtaagaggagaaaatgggcaaccagggcctcctggagccccaggagaaaggggcctccag
ggatttgctggccgtgcaggaaaccctggacctcctggtcctgctgggcctgcagggcag
ccaggctctgctggtactaatggagtcaaaggtgacaagggggaagtcggtgttggagtt
cccggtcccagaggagagagaggagattcaggacccagaggggaggagggccgagctggc
atggatggggacagaggaccagtgggcccaccagggattagaggccttcgaggagaaaag
ggagacggtggactcccgggtgagaaaggagataagggggacactgtgctggtgggagga
ccacctggagaaaagggcaacaaaggagaaacaggtgacagaggagtcaaaggggctcaa
ggagaaaaagggacaaaaggtcaagagggtccatcaggagagcagggtcaaagaggggaa
cctggagagcgaggatccactggtttcccaggggccagaggcccgggtggacagaaggga
gaggcaggagatcctggagtacctggtgaatcgggtttacctggaaaagacggtctggca
ggccgtaaaggggacaagggggaagttggtgtcagtggactgagaggaatcaagggcgac
cgtggacccaagggggcttgtggatctgatggacccaaaggagaaaagggggattcaggc
attcatggacgatcaggcttaccaggaagaaaaggtgaacagggggacatcggacctgct
ggggcgcctggcactcctggaaaagaaggactagttggtcccaagggtgatagaggtttt
gacggggctgctggacctaaaggaactcagggagagaaaggtgaaaggggaccgtctggt
attcctggtcctcctggtcccagaggggccgacggggcccccggcttgactggcccacaa
ggactggcaggtcctaaaggccctgaaggactccaaggacagaagggggagagaggtcca
atcggtcctgccatggtgggccctcggggcatcccaggaatcccaggcgagagaggagag
ccgggagacatgggaccagatggagccaagggagacagaggagagccaggcatgacggag
gatgagatcagagagtacgttcgcgctgagatgaaacagcactgtgcgtgtggaggttca
ggccctgacactcggtcccagcccacactcagggctcggccaacaacagagcaagaactg
gtactgaatggtgagaagggccgggagctgcgtgtggtggtaaacaccaatgaccccgaa
tacgagcacatctactccattgaggccctggatgaccccagggatgacatgctctacttc
tccacagagtctgccaatctcactgaaggcgaggattttaaaacaaaagctgccaaagcc
gattcaagcaaatcaagcggcactgctggctctcacaaaacagctgcccgtcagaaacaa
atggaaattccacctctgtccgcagacaagtccagatcaggcaggccaaagagggctgtg
caagaggaaggtctgaccgacctctgtctgctgcccatggatgagggcagctgtcagaag
tacactctgcgttggtattttaacaaccaggttcaagcctgcaggcctttcatctacagc
ggctgcaaaggaaacgacaaccgcttccatcacctggaggagtgtgagcaggcctgcctc
cgggagaccgaagatcctcattccttacagacggcacggtga
DBGET
integrated database retrieval system
