Poeciliopsis prolifica (blackstripe livebearer): 129359224
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Entry
129359224 CDS
T09758
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129359224 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129359224 (exosc5)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129359224 (exosc5)
BRITE hierarchy
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
129359224
NCBI-ProteinID:
XP_054884668
LinkDB
All DBs
Position
Unknown
AA seq
236 aa
AA seq
DB search
MTSFSCDKHRPHREGGKMEVSPSSTVSLREFGCEQTLLSRPDGSASFVQGDTSVMAGVYG
PAEVKISKEIYDRATLEVLVHPKVGLPGVRERSQEQCVRETCEASLLLSLHPRSSLTLIL
QVLHDDGALLSCCLNAACMALMDAGLSMSRLFCGVTCAISADGEIITDPTAAQEKESRAL
MTFAIDSKERRVMMSSTKGSFSVQELQQCVAVSQKASEKIFQFYRDSVRRRYSKNL
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcatttagctgcgacaaacatcgtccccaccgtgaaggcggcaagatggaagtt
tctccttcttcaactgtttctctcagagagttcgggtgtgaacaaaccttactgtcccgt
cctgatggatcggcgtccttcgttcagggagacaccagtgtgatggcgggagtctacgga
cctgctgaggtcaaaatcagcaaggaaatctatgaccgggcaaccctggaggttctggtt
catcccaaagtgggactgccgggtgtgagggagcgatcacaggaacaatgtgtgcgggaa
acatgtgaggcgtctctgcttttgtccctccatcctcgctcgtcgctcacgctcatcctg
caggtgctgcacgacgacggcgccctcctgtcctgctgtctgaacgcagcctgcatggct
ctgatggatgccggcttgtctatgagtcgcctgttttgtggcgtgacctgcgccatcagc
gcagacggtgaaatcatcacagacccgactgcagcccaggagaaggaaagtcgagctttg
atgactttcgccatcgatagcaaagagcgcagagtgatgatgtcatcaaccaaaggctcg
ttctcagttcaggagctgcagcagtgcgtagccgtcagtcagaaagcgtcagagaagatc
ttccagttctacagagactccgtcagacggcgatactctaagaacctttga
DBGET
integrated database retrieval system
