Poeciliopsis prolifica (blackstripe livebearer): 129361078
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Entry
129361078 CDS
T09758
Name
(RefSeq) collagen alpha-2(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04510
Focal adhesion
pprl04512
ECM-receptor interaction
pprl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129361078
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129361078
09142 Cell motility
04820 Cytoskeleton in muscle cells
129361078
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprl04147
]
129361078
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129361078
Exosome [BR:
pprl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129361078
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129361078
Hyaluronan
Extracellular matrix or blood plasma proteins
129361078
BRITE hierarchy
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
129361078
NCBI-ProteinID:
XP_054887703
LinkDB
All DBs
Position
Unknown
AA seq
1047 aa
AA seq
DB search
MTGIDSVAVMISWVIILTVFQAASPQPAPPRGPRPVPGRGDSPEPTPTPLPPEPTTRPEG
CETTIIDCPIKLFFTIDTSETIALQESPPGSLVESIKEFMKIFAQKLEDEEYRGQIQITW
SFGGLHFSQKQVLFSQFTTRQSFIRNLSQIKYLGKGTYIDCALTNMTHQMTYSGTQAILF
SVVITDGHVTGSPCGGIKVAADRARDRGIHIFSVAASRSVDEVGMREIAGSPTEVYRDDY
IVMEIVNGRPRMNTETIDRIIKVMKYQAYLQCYKPTCLEVPGIPGRKGASGPKGIKGDRG
IKGPKGHKGNQGDPGIEGSIGQPGLKGEIGFIGEKGEMGLIGAKGAMGSPGRNGTDGQKG
KIGRIGAPGCKGDPGEKGPVGYPGDPGDSGLSGKTGEKGDTGLPGKIGPQGPVGNPGLTG
EKGNSGNPGSPGERGLPGISGKPGQKGELGSRGDPGRKGAPGQDGAPGPKGDRGASGDRG
RPGEDGVRGAKGDQGLPGPRGWPGEPGSAGGNGTVGPPGDPGLRGDPGPPGPQGDNGRPG
FNYPGPRGPTGERGDPGKRGPRGDRGQCGAKGETGAKGAPGEPGEPGQPGEPGERGPQGD
PGKDGGPGPAGDPGLTDCDVMTYIRETCGCCDCEKHCGALDIVFVIDSSESVGMTNFTLE
KNFVINTINRLGSMASDPTSPTGTRVGVVQFSHEGTFEAIRLDDPSIDSMSSFKTAVKNL
QWIAGGTFTPSALKFAYDNLIRDSKRARAKVSVVVVTDGRFDPRDDDSKLRYLCDDPNVV
VNAIGVGDMFDKEHDSETLVSIACNNKNRITEMKQYTDLVADNFIQKMETVLCPDPVIKC
PDLPCKTEFDVAPCVGRPIDLVFLLDGSERLGMENFGHARHFVQMVANALTMAKNRNDQN
GARLALTEFGNENENQVAFLLTHDQKAITSGLSGLHYLDASSAVGPAIFKTINEILGKGP
TRKTRRGAEVSFVFITDGITNITNLDEAASAMRREHIFSTVIATGSDVDEEVLTKLAMGD
QTAIFKNQKFSDLLQPSFFDRFVRWVC
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgaccggaatcgattcagtcgcggtaatgatttcatgggtcatcatcctgacggtgttc
caagccgcatcgcctcaacctgctccaccccgaggacccaggcccgtacctggaagagga
gacagtccggaaccaacaccgactccgctgccgccagagcccacaacaagaccagaaggt
tgtgagacaacgatcatcgactgtcccatcaagctgtttttcaccattgacacctcagag
accatcgccctgcaggaatctccgcccgggagtctggtggagagcatcaaggagtttatg
aagatattcgcccagaaactcgaagacgaggaatacaggggccagatccagatcacttgg
tcctttgggggattgcacttctctcagaagcaggtgttgttcagtcagttcacgaccaga
cagagcttcatcaggaatctcagtcagataaaatacctgggcaaaggcacctacatcgac
tgcgctctcacaaatatgacccaccagatgacatactcagggacacaagctatcctgttc
tcagtggtcatcacggatggtcacgtgacggggagtccgtgtggggggatcaaggtggca
gctgacagggctcgggatcgagggatccacattttttcagtagcagcctccagaagtgtc
gatgaagtagggatgagggagatagccggctcacccacagaggtgtaccgagacgattac
attgtcatggagattgttaatggaagaccgaggatgaacactgaaactattgatcgcatc
atcaaagtcatgaaatatcaggcatatctacagtgttataaacctacatgccttgaagtc
cctgggatcccaggacgaaaaggggcctcaggtccaaaaggcattaagggtgacagaggc
atcaaaggaccaaaaggtcataaaggtaaccagggtgatcctgggattgaaggttccatt
ggacaacctggtctaaagggagaaattggttttattggtgaaaagggtgaaatgggatta
attggagcaaagggtgcgatgggttcaccaggaaggaatggaacagatggacaaaagggt
aaaattggtcgaattggagctcctggctgcaaaggtgatccaggtgaaaagggaccagtt
ggatacccaggagaccctggggactctggattatctggaaaaacaggagaaaagggtgat
acaggtctccctgggaagataggccctcaaggccctgtgggaaatccaggattaacgggt
gaaaagggaaattctggaaatccaggatcacctggagaaagagggcttccggggatcagt
ggcaaaccaggacagaagggcgaactgggcagcagaggagatcctggaaggaagggggcg
ccaggacaagatggggccccagggccaaagggtgatcgaggagcatcgggggacagaggt
cgacctggggaggatggagttaggggtgcgaagggagaccaaggactaccaggaccaagg
ggttggccaggagaaccaggcagcgctggaggaaatggcacagtggggcctcctggagac
cccggactcagaggagaccctggaccacctggaccgcagggagacaatggcagaccagga
ttcaactaccctggaccaagaggaccaacaggagagagaggagatccgggcaagagagga
cccagaggggacagaggtcaatgcggtgcaaaaggggagacaggagccaaaggagcacca
ggagagcctggtgaaccaggccagccaggagagccaggagagagaggaccccagggagac
cctggaaaagatgggggtccaggaccagctggggatcctgggctcactgactgtgatgtt
atgacgtacatcagggagacatgtggttgttgtgactgtgagaaacattgcggtgctctg
gacattgtctttgtgattgacagctctgagagcgttgggatgaccaacttcactctggaa
aagaactttgttattaacaccatcaacaggctgggatcaatggcctctgaccccacatct
ccaactggtacaagagttggagtggtacagttcagtcacgaaggaacgtttgaggccata
cgactcgatgatccttcaatagactccatgtcttcattcaagacagcagtgaagaatctt
cagtggattgctgggggcacatttacaccctctgcactcaagtttgcctatgataaccta
ataagggacagcaagagagcccgtgccaaagtatctgtagtggtagttacagacggtcgc
ttcgaccctcgtgatgatgacagtaagctcaggtacctctgtgatgaccccaatgtggtg
gtgaatgccattggggttggtgacatgtttgacaaggaacatgacagtgagaccctagta
tcaatagcctgtaacaacaagaaccgcatcactgagatgaagcaatacacagacttagtg
gctgacaacttcattcagaagatggaaacagttctctgtcctgatccagtgattaagtgt
ccagaccttccttgcaaaactgaatttgatgtagctccatgtgttggacgacccatagac
ctggtgtttcttctcgacggttcggagcgccttgggatggaaaactttggccatgcacgt
cattttgttcaaatggttgcaaatgcattgacaatggccaagaacagaaatgaccaaaac
ggggctcgtctggcactgacagagtttggcaatgagaatgaaaaccaagtggcttttctt
cttacacacgaccagaaggctatcacttctggtctatcaggtttacattatcttgatgcg
tcgtcagcagtggggcctgccatcttcaaaaccatcaatgagattttgggtaaaggaccc
actcgcaagacgagacgtggtgccgaggtttcatttgttttcatcacagatggtattact
aacatcaccaacctggacgaggcagcttctgcaatgcgcagggaacacatcttttccact
gtgattgccacgggaagtgacgtggatgaagaagtcctaacaaagttggctatgggtgac
cagactgccatctttaagaatcagaaattttctgatctgttacagcctagtttctttgac
cgtttcgtcaggtgggtgtgttaa
DBGET
integrated database retrieval system
