Pimephales promelas (fathead minnow): 120487008
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Entry
120487008 CDS
T08155
Symbol
fn1a
Name
(RefSeq) fibronectin 1a isoform X1
KO
K05717
fibronectin 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04510
Focal adhesion
pprm04512
ECM-receptor interaction
pprm04810
Regulation of actin cytoskeleton
pprm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120487008 (fn1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120487008 (fn1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120487008 (fn1a)
04810 Regulation of actin cytoskeleton
120487008 (fn1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprm04131
]
120487008 (fn1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprm04147
]
120487008 (fn1a)
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120487008 (fn1a)
04990 Domain-containing proteins not elsewhere classified [BR:
pprm04990
]
120487008 (fn1a)
Membrane trafficking [BR:
pprm04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
120487008 (fn1a)
Exosome [BR:
pprm04147
]
Exosomal proteins
Exosomal proteins of bladder cancer cells
120487008 (fn1a)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120487008 (fn1a)
Domain-containing proteins not elsewhere classified [BR:
pprm04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type I domain-containing proteins
120487008 (fn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
fn1
Pur_ac_phosph_N
fn2
NDNF
Motif
Other DBs
NCBI-GeneID:
120487008
NCBI-ProteinID:
XP_039539107
LinkDB
All DBs
Position
Unknown
AA seq
2480 aa
AA seq
DB search
MTGGPLGTALAVALLACTVQCMPKGTGKHRRQAQEHSVSSVSQDGCVENSQLYGVGEQWE
RSYLGSTLICTCHGVSGIKCKSKPDAEETCYDKVNTRSYRVGETYERPKDGMIWDCTCIG
SGRGKISCTIANRCHEGGHSYKIGDTWKRPHDTGDYMLECVCLGNGKGEWTCKPVAERCY
DNTGMSYMVGETWEKPYQGWMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSK
TDSRGHVLQCLCTGNGRGEWKCERHASLHTTSLGTGSRVVTNVQPVVYPPHVVPEHPAEG
SCLTDAGISYALGMRWIKTQGSKQMLCTCLGNGVSCEDSVESQSQVYGGTSGGQPCVFPF
VFMGKTFYSCTSEGRSDGQLWCSTSSDFEKDYKYSFCTNNHVMVTTRGGNSNGALCQFPF
LYNGRNYTDCTADGRRDGMKWCGTTYNYDQEQRFGFCPMAAHEEVCTTGEGVMYRLGDQW
DRRHDVLGHMMRCTCVGNGRGEWSCIAYSQIKDQCIVDNLTYEVNQTFTKQHEEGYMMNC
SCFGQGRGRWKCDAIDQCQEPETRVFYQIGESWDKLIHGIHYRCHCYGNGIGELSCEPQQ
SFSGGNRPVQVIISESGNQPNSHPIQWNAPASAHITQYILKWRPKNTHTQWMEVTIPGHL
NSYTIAGLKPGVTYEGQLISILRFGRRETTRFDFSTVHGSLATSEGFTTQPPPMVDTSES
VTEITSSSFVISWVSASDTVSGFRVEYELSEEGGQTGQPMILDLPHTATSVNISELLPGR
KYTVNVYEVTGEGEPNLILTTSQTTAPDAPSDHEVEDVGETSMIISWSKPVAPITGYRVV
YTPSEEGSSGSTELNLPNTATSVTLGDLRPGLLYNISIYSVEESLESEPIFVQVTTAGEP
LAEEVPSPTDLQFFGVSDSKITFTWSGPSTEVSGYRVSVGEVGPDGLTEREIPLPLTQNA
YAEITQLQPGTLYRFFIFTLKSGEESEPLVGEQATKPDQPTNIHFANITEDSTVIIWSAP
RAQITGYKLFLTVEGSNPKQLRIPARLSHYTILNLQPDTVYTATLHAEKGNVLSEGSVAT
FATLQPMGNAPYFSTDVTDTSIVVSWIPVPKIGYKLTVRPSQGGEAPRDEISESGSVVIS
GLTPGVEYTYSVQPIISGHEHGNPITRRVVTPLSPPTDLNLESNPNTGELTVQWNDAKIP
DITGYRVTCTPTKGQQGNSVEEFVKAGQNSCTLENLSPGVEYNVSVFTVKDDMESVPVSS
TVTPDVPKITDFNFVNITDSTIGLSWSPLNSTAITGYRITVLAAGDSVPIFVEFVEPTTG
FYTVHGLEPGIDYDITVTTVTENGESEPITITQQTAVPAPSGLSFTGVTADSMLVSWNAP
QVPKSSDIERYIIHYHPVDDDDDTTERTVEGSENFVVLHHLVPNTEYLVSVICVYEGRES
SPVIGTQRTVLDAPVGLQFSDVGTNSFTVRWQAPQAVISGYRIQHQMTSGGRAKEERLPP
SRSHFTLTGLTPETEYSINVYAVSGSRESLPLTGTQSTISDAPTDLEVISSTPTSITVRW
DAPSVTVRYYRITHGESGGFDAPLEFTVPGSQSTATIEGLRPGTDYTITVYAVTGRGDSP
ASSTPIHVIHRTDIESPLGMEVTDVKDNTITVRWSPAVGPITGYRVTGTPLNGQGPVFSE
VVAPDQTEMTFSGLMPTAEYTVSVYALGQDGESPPLVENVLTTVDKPKDLSFSDVDSTSM
RISWESPDGVVSSYRVLYYSPEEGERELFPVLNGEEESAVIRDLRPGTEYTVKVIALHDR
TPSPPLVGTQTTAIPGPTSLYFSQVGPTSFTVSWSSSNARLTGYRVAITPKNKNGPTKED
NIAPDSTEFHATGLMPGTDYEVEVYGVKNSLTSRRVKGEVTTPDNISPPRRVRISNVKDS
SITLTWRSKTETISGFLVEATPTMGGHNPIQRTIEPDSRTHTITGLEPGTNYKINIYTLN
GNGRSEPFTLTATTAKPVISPPTNLHFTSLTSTSISFTWEPPRSTITGYYVTYEEAGDRP
KELTPRPQAGRTFAYISGLKPGTEYVIKIVALNNAQRSTALTGKAKTQLESHQLLPQLPD
PSRPRHDILDVPEDNDHFNNHVQMLGPNRHNTLGQQGQHIYTEYQSFNLGNNGQHPHPPN
HREPLVYIPLPGADGQRVPVVKVNEGPEPGFPFGGLYNETNLPQESQTQTTIIWQPVPHT
SEYVVSCSPITEINEKSFQMRLPGTSTSATLIGLTSGASYNVLVESVNGDQKQKVLDDVV
TVGNSVPGAGVTPSSKDLCYDTFTATYHEVGAEWERMSETGFKLWCKCLGLGSGHFRCDS
SKWCHDNGHNYRIGEKWDRHAENGHMMSCSCLGNGKGEFKCEPHESTCYDEGKLYQVGNQ
WQKEYLGAICTCTCYGGQQGWRCENCRRPGTEVDADLIQPPVRTDAFDRYRENALRKLNI
QCPIECLRPDLLADAQSPLE
NT seq
7443 nt
NT seq
+upstream
nt +downstream
nt
atgaccggtggcccattgggcacggcgttggcagtggctttgctcgcctgcactgtgcaa
tgtatgccgaaaggaacggggaaacataggagacaagctcaggaacactcggtgtcttcc
gtgtcccaagatggctgtgttgaaaatagtcagttgtatggagttggagagcaatgggag
cgcagttatctgggcagcacactgatctgcacttgtcatggagtttctggtataaagtgt
aaatcgaagcctgatgctgaagagacctgctatgacaaagtaaacactcgctcctatcgg
gttggagagacttatgagaggcccaaggatgggatgatctgggactgtacttgcattggc
tctggcagagggaaaatcagttgcaccattgcaaaccgctgtcatgagggagggcactcc
tacaagattggagacacatggaagagaccccatgacactggagactacatgctggagtgt
gtctgtttgggaaatgggaaaggagagtggacctgcaaacctgttgcggagcgctgttac
gacaatactggcatgtcctacatggttggtgagacctgggagaaaccctaccaaggctgg
atgatggtggactgcacctgccttggagaaggaagtggacggattacatgcacatccaga
aaccgctgtaacgaccaggacacacgcacttcttaccggatcggagacacgtggagcaag
acagattctcgtggacatgtgctacagtgtttgtgtactggaaatggacgtggagagtgg
aagtgtgagagacatgcatcactgcacaccactagcctgggtactgggtctcgtgtggtg
accaatgtccagcctgtggtgtacccgccacatgtggtgcctgaacaccccgcggaggga
tcctgtctgacagacgcaggcatttcctacgccctgggaatgcgttggatcaagacccaa
ggcagcaaacagatgctgtgtacatgcttagggaatggtgtcagctgtgaagactcggta
gagagccagtcccaggtgtatggtgggacctcaggtgggcagccgtgtgttttccctttt
gtgttcatggggaaaacattctactcctgcacgtccgagggacgcagtgatggacagctc
tggtgcagcacctcatctgactttgaaaaggactacaagtattccttctgtaccaacaac
catgttatggtcacaaccagaggaggaaactccaatggtgcactctgtcagttcccgttc
ctctacaacggccgtaactacaccgactgcacggctgacggcaggagagatggcatgaaa
tggtgcggcacaacttataactatgaccaagagcagcggtttggcttctgtcccatggca
gctcatgaggaggtgtgtaccactggcgagggtgtgatgtatcgtctgggagatcagtgg
gacagacgccatgatgttctgggtcacatgatgcgctgtacgtgtgtgggcaatggccgt
ggagaatggagttgcattgcctactcacaaatcaaagaccagtgcattgtggataatttg
acctatgaagtaaatcagactttcactaaacagcatgaggaaggctacatgatgaactgc
agctgttttggtcaaggccgtggacgctggaagtgtgatgctattgatcagtgccaagag
ccagagactagagtgttctatcagattggagagtcctgggacaaactcattcatggaatc
cactacagatgtcactgctatggaaatggcattggagagttgagctgtgagcctcagcag
tctttctctggtggtaatcgtccagtgcaggtgattatatcagaatctggcaaccagccc
aactcccaccccatccaatggaacgccccggcttctgcacacatcacacagtacatactc
aaatggagaccgaaaaacacccatacccaatggatggaggtcactattccaggccatctg
aactcatacaccattgcaggactgaagccaggagtcacttacgagggtcaactcatcagc
atcctgcgttttggacgaagagaaaccactcgctttgatttctccactgtgcatggctca
ttggctacctctgagggatttaccactcagccccctccgatggtggacacctctgagtct
gtgactgagatcacttccagcagtttcgtcatctcttgggtgtccgcgtctgacacagtg
tctggattcagggtggaatatgagctgagtgaggagggaggccagacaggacagcccatg
atcttggaccttcctcatacggctacatccgtgaacatcagtgaacttctcccaggaaga
aagtatactgtaaatgtgtatgaagttacaggagaaggagaacccaacctgatccttacc
acttcccagactacagctcctgatgctccttctgatcatgaagtagaagatgtgggggag
acctctatgattatcagctggtctaaacctgtggctcctatcacaggttaccgtgtggtg
tacaccccatctgaagagggcagttctggcagcactgagctgaacctgcctaacactgcc
acctcagtgaccctgggtgaccttcgccctggtctgctctataacatcagcatctactca
gtggaagagagtctggagagtgaacctatttttgttcaggtcaccactgctggagaacca
ctggcagaggaagtaccctctccaactgatctgcagttctttggggtgtctgactctaag
atcacattcacctggtccggcccatccactgaggtgtctgggtaccgtgtttctgtgggt
gaggtgggcccagatggattgacagagagagaaatcccgctcccgttgacacagaacgcc
tacgctgagatcacacagctccaacctggaaccctctaccgtttcttcatctttactctc
aaatcgggtgaagagagcgagccactggttggagaacaagctacaaagcctgaccaaccc
accaatattcatttcgctaacattactgaggacagtactgtaatcatctggtcagctcct
agggctcaaatcacaggttacaaacttttcctgactgttgagggctcaaaccccaaacag
ctgcgtatccctgcccgcttgtcacactacaccatcctcaacttgcagcctgatactgtg
tacactgccactctgcatgcagaaaaaggcaatgtgcttagtgaggggtccgtcgccaca
ttcgccacacttcagccaatgggaaatgctccttacttcagcactgatgtcacagacact
tccatcgttgtctcctggatccctgtgcctaaaattggatacaaattaaccgtgaggccc
agccaaggtggagaagcccctagggatgagatctccgagtctggtagtgtcgtcatctca
ggtctaacccctggagttgagtacacctacagcgtccagcccatcatcagtggtcatgag
cacggcaaccccatcactcgacgggtggtcactcctctttctccacccacggatctgaac
ctggagtccaacccgaacaccggagagctgactgttcagtggaatgatgctaaaattcca
gacatcacgggatacagagtgacctgcacccccaccaaaggacagcaagggaactctgtg
gaggagtttgtgaaggcgggacagaactcgtgtacgttagagaacctgagtccaggagtg
gaatacaacgtcagcgtgtttactgtgaaggatgatatggagagcgttcctgtttccagc
actgtgactccggatgtgcccaaaataactgattttaacttcgtcaacatcactgactcc
actattggccttagctggagtcctcttaactccaccgccattacgggctaccgcatcacg
gtgttggctgcaggggacagtgtcccaatctttgttgaatttgtggagcccacgacaggc
ttttataccgtgcacggtctggagccggggattgattatgacatcaccgtcaccacagtc
acggaaaacggagagagtgaacccatcaccatcacccagcaaacagctgtccctgcccca
tctggcctgtccttcactggagtgactgcagacagtatgctggtgtcctggaatgctcct
caggtccccaaatcctctgatatcgaacgctacatcatccactatcatccagtcgatgac
gacgatgacaccactgagcgcactgtagaaggaagcgaaaattttgtcgttcttcaccat
cttgttcccaacactgagtacctggtgagtgtgatttgtgtctatgaggggagagagagc
tcacctgtgattggcactcagagaacagtccttgacgctcctgtcgggctgcagttctct
gatgtcggcaccaactccttcaccgtgcgctggcaggctcctcaggccgttatctcggga
taccgtatccaacaccaaatgaccagtggggggcgtgctaaggaggagagactgcctcca
tcaagaagccatttcaccctcacaggcctgaccccggagacagagtacagcatcaacgtc
tatgccgtcagcggatcccgcgagagtctgcctttaactggaacccagtctaccatctct
gatgcccccactgatctggaagtcatttcctcgacaccaaccagcatcacagttcgttgg
gacgccccctcggtcactgtgaggtactacaggatcacgcacggagagtcaggagggttt
gacgctcctctggaatttactgtccccggctcacagtccactgccactattgaaggccta
cgtcctggcaccgattacaccatcactgtttacgctgtgaccggcagaggggacagccct
gcgtccagcacccccatccatgttatacatagaacagatattgagtctccactagggatg
gaggtgactgacgtgaaggacaacactattactgtacgctggagcccagcagttggcccc
atcacaggataccgtgtcacaggaactccactaaatggacagggaccagttttctctgaa
gtggtggctccagaccagactgaaatgacgttctctggcctgatgccgactgcggagtac
actgtcagcgtctacgctctgggccaggacggagagagcccccctctggtcgaaaatgta
ctcacaacggtggacaaacccaaagacctgtccttcagtgacgtggactcaacctccatg
cgcatctcctgggagagtcctgatggcgtggtctcctcttacagagtgttgtactacagt
ccagaggagggagagagagagctgttccctgtcctcaatggagaggaggagtctgcagtg
atccgtgacctcagaccgggcacagaatacactgttaaagtcatcgcactgcatgaccgg
acccccagccctcctctggtgggcactcagacaacagctattcctggacccaccagtctg
tacttctcccaggtgggtccaacatccttcactgtctcctggtcttcctctaacgccagg
ctgacaggttaccgtgtggccatcacccccaagaacaagaacggccccactaaagaggac
aacatcgcccctgactccactgagttccacgccactggactcatgcctggcactgattat
gaagtggaggtttacggtgtgaagaactctctcaccagccgccgtgtcaagggagaagtc
acaacacctgacaacatcagtccacctcgacgtgtccgtatatccaatgtgaaggactcc
tccatcactctcacctggcgctctaagaccgagactatctcaggcttcctggtagaagcc
acaccaaccatgggcggccataatcctatccagagaaccatcgaaccggattcacgcacc
cacacgattactggtctggagccaggaaccaattataagatcaatatctatactctgaat
ggaaatggacgtagtgagcctttcactcttacagctactacagcgaaaccagttattagc
ccacctacgaacctccatttcacctctctgacttctacttcgatctctttcacctgggag
cctccacgaagcactattactggatactacgtgacctatgaggaggctggagaccgtcct
aaagagttgacccctcgaccccaggctggcaggaccttcgcttatatctctggtttgaaa
ccaggcactgagtacgttatcaagattgttgcattaaataatgctcagagaagcactgca
ctgactggaaaggcaaaaactcaactggaaagtcaccagctgctccctcagctccccgac
cccagccggccccgtcatgacatactagatgtccccgaggacaatgaccacttcaacaac
cacgtgcaaatgctggggccaaaccgacacaacacactggggcagcagggccaacacatc
tacactgaatatcagagcttcaacctgggaaacaacggccagcatcctcatcccccaaac
caccgcgagcccctggtctacatccctctgccaggagcagatggccagagagtgccagtg
gtgaaggtgaacgagggccctgaaccaggcttcccctttggtggcctttacaatgagaca
aacctgccccaggaatctcagacccagaccacaatcatatggcaacctgtgccgcacacc
tcagagtatgtggtgtcatgcagtcccatcacagaaatcaatgagaagagcttccagatg
cgtctgcctggtacatctactagcgctacactgatcggcctcacctctggtgcctcctat
aatgttcttgtggagtctgtcaacggagaccaaaaacagaaagtcctcgatgatgttgtg
actgttggaaacagtgttccaggggctggagtgactccctcaagcaaggatttgtgctac
gatacattcactgccacctaccatgaagtgggtgctgagtgggagcgcatgtctgagaca
ggctttaaactctggtgcaagtgccttggcctcggcagtggtcatttcagatgtgattca
tccaagtggtgccatgacaatggccacaactatcgaattggcgagaagtgggaccgccac
gctgagaacggtcacatgatgagctgctcctgtctgggaaacgggaaaggagagtttaaa
tgtgaaccccatgaatccacctgttatgatgaggggaagttgtaccaggttggcaaccag
tggcagaaggagtatctcggagccatttgcacctgtacctgctatgggggacaacagggc
tggcgttgtgagaactgtcgtcgtcctggtactgaagttgacgcggacctcattcagcct
ccagtgcgtactgatgctttcgaccgatacagagagaacgccctacgcaaactaaacatc
caatgtcccattgagtgccttagaccggacctgttagcagatgcccagagccctctagaa
taa
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integrated database retrieval system
