Pimephales promelas (fathead minnow): 120492274
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Entry
120492274 CDS
T08155
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04120
Ubiquitin mediated proteolysis
pprm04137
Mitophagy - animal
pprm04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120492274 (prkn)
04120 Ubiquitin mediated proteolysis
120492274 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
120492274 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprm04131
]
120492274 (prkn)
04121 Ubiquitin system [BR:
pprm04121
]
120492274 (prkn)
03029 Mitochondrial biogenesis [BR:
pprm03029
]
120492274 (prkn)
Enzymes [BR:
pprm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
120492274 (prkn)
Membrane trafficking [BR:
pprm04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
120492274 (prkn)
Aggrephagy
Other aggrephagy associated proteins
120492274 (prkn)
Xenophagy
Other xenophagy associated proteins
120492274 (prkn)
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
120492274 (prkn)
Mitochondrial biogenesis [BR:
pprm03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
120492274 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_12
zf-RING_14
ubiquitin
Rad60-SLD
Dsc3_N
ADAMTS_CR_3
Rad60-SLD_2
HypA
Motif
Other DBs
NCBI-GeneID:
120492274
NCBI-ProteinID:
XP_039546410
LinkDB
All DBs
Position
Unknown
AA seq
303 aa
AA seq
DB search
MIVYVRFNSSHGFPVELERGASVSELKQVVGRLQGVQPDQLRVIFAGRELCDESTLQGCD
LPEQSTVHVVLPPSSTRRSELVLQRMLSHGTESLTRLDLSSSRLTTASEGLAVILETDAS
RQGDSAGHTETKGHSSFYVFCKAVCKAIQPGKLRVRCRDCKQGTLTLSRGPCCWDDVLLP
NRIHGVCQSQDCDGRLAEFYLKCAAHPTGDNDSSAALDLIMPNTRRVPCIACTDIVTPVL
VFQCAERHVICLDCFHLYCVTRLNERQFIQEPLVGYSLPCAGKHTLSVHGHEWLLVCVCV
CVC
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtatgtgcggtttaattccagccatgggttcccagtggagttggaaaggggt
gcgagtgtatctgaactgaagcaggtggtggggcgtttgcagggcgtacagcctgatcaa
ctgcgggtcatctttgctggacgagagctctgcgatgaatccacacttcagggctgcgat
ctccccgagcagagcacggttcacgtggtcctgcccccgtcctcgacccggcgctctgag
ctggtcctgcagcgcatgctgagccacgggaccgagagcttgacccgactcgacctcagt
agctcccgtctgaccaccgcatctgaaggcctggctgtcattctggagacagatgcgtcc
agacagggggactctgctggacacacagaaaccaaaggccacagcagtttctatgtgttc
tgtaaggcggtctgcaaggccatccagcctggaaaactacgcgttcggtgtagagactgc
aaacaaggcacccttactctcagtagggggccgtgctgctgggatgatgtccttctccct
aacaggattcatggagtatgtcagtcacaagactgtgatggcagactagcggagttttac
ctgaaatgtgctgcccaccccaccggtgataatgactcttcagcagcgctggacttgata
atgcccaacacacgcagagtgccctgcatcgcctgcaccgacattgtgactccagtgctg
gtgtttcagtgtgctgagcgtcacgtgatctgcctggactgcttccacctgtactgtgtg
acccgactcaatgagcggcagtttatccaggagccgctggtgggatactccctgccctgc
gcaggtaaacacaccttaagtgttcatggacatgaatggctattagtgtgtgtgtgtgtg
tgtgtgtgctag
DBGET
integrated database retrieval system
