KEGG   Pseudomonas psychrotolerans: BJP27_01305Help
Entry
BJP27_01305       CDS       T05074                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppsl  Pseudomonas psychrotolerans
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppsl00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BJP27_01305
Enzymes [BR:ppsl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BJP27_01305
DNA repair and recombination proteins [BR:ppsl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BJP27_01305
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
complement(268645..271200)
Genome map
AA seq 851 aa AA seqDB search
MARSTSEYNRKRNFDITAEPRDEDSPRPRKAKGALSFVIQKHDARRLHYDFRLELEGTLK
SWAVPKGPSLDPGEKRLAVQVEDHPLAYGSFEGSIPEGQYGAGDVIVWDRGEWQADGDAA
AGYAAGKLKFELRGEKLRGHWTLVRTRLRGHSDKPQWLLIKERDDEARDTADYEVTAAEP
DSVLSDKTLPRLDQGKTKAATKPKATQAPSRKGTAKARKAELPETLDAELATLVDSPPAG
DWLYEVKYDGYRLLARVEGDQVQLFTRSGNDWTARLPEQAKALAALGLDNAWLDGEIVVN
DAQGVSSFQALQNAFETAKDSRIAYYLFDLPYLNGADLREVPVEQRRELLGKLLEERNAS
DLLRFSAAFEVPADRILASACELGLEGVIGKRLGSPYRSRRSKDWIKLKCAHRQEFIIVG
YTPPKGGRQHLGALLVALHDDQGELHYAGKVGTGFTAAQLKQLHERFQPLISDRPPVVDP
PKGAAYRQVTWLKPEQLCEIAYAELTQDRIVRQGVFHGLRDDKPASEIGLETATPAREAE
RADRTPRKASGKQKDAEVAGVRISHPERVIDDASGARKLDVAGYYAAVADWILPHLADRP
VALVRTPDGIAGEQIFQKHKQTLAIPHIRELDPALDPGHAPLMVIDSRDALIGAAQMGTV
ELHTWNATADRIERPDRFILDLDPDPALPWSRMMEAAELTLTLLDELDLQAFVKTSGGRG
LHLVVPLDRRQDWDTVKAFAQAAAQHLANTLPKLFVAKMGAENRRGRIFIDYLRNRHGAT
TVSAFSLRARPHLGVSVPVARSELARLERSDQWHFDTLLQRLEGLKDDPWAGYAKVRQGL
TRARRQRLGVD
NT seq 2556 nt NT seq  +upstreamnt  +downstreamnt
atggcccgctcgaccagcgaatacaatcgtaagcgcaacttcgacatcaccgccgaaccc
cgcgacgaggacagcccccgcccccgcaaggccaagggcgctctgagtttcgtcatccag
aaacacgacgcccgccgcctgcactacgacttccgcctggagctggagggcactctcaag
agctgggcggtgcccaagggccccagcctggatccgggcgagaagcggctggcggtgcag
gtggaggatcatcccctcgcctacggcagcttcgaaggcagcattcccgaggggcagtac
ggggcgggcgatgtcatcgtctgggaccgtggcgagtggcaggccgacggcgacgcggcg
gcaggctatgccgccggcaagctcaagttcgaactccggggcgaaaagctccgcggccat
tggaccctggtacgcacccggctgcgcgggcacagcgacaagccccagtggctgctgatc
aaggaacgcgacgacgaggcccgggataccgcggactacgaggtgaccgccgccgaaccc
gacagcgtcctgagcgacaagaccctgccgcgcctggaccagggcaagaccaaggctgcc
accaaacccaaggccacccaggcgcccagtcgcaagggcacggccaaggcgcgcaaggcc
gagctgcccgagaccctggacgccgagctggcgaccctggtcgatagccctccggccggt
gactggctctacgaggtgaaatacgacggctaccgcctgctggcccgggtggagggcgat
caggtccagctcttcactcgcagcggcaacgactggaccgcgcgcttgccggaacaggcc
aaggccctggccgcgctcggcctggacaacgcttggctggatggcgagatcgtggtgaac
gatgcccagggcgtgtcgagtttccaggccctgcaaaacgccttcgaaaccgccaaggac
agtcgcatcgcctattacctcttcgacctaccctacctcaacggcgcggatctgcgcgag
gtgcccgtcgagcagcgccgcgagctgctgggcaaactgctggaagaacgcaacgccagc
gacctgctgcgcttttccgcggccttcgaggtgccggccgaccgcatcctggccagcgcc
tgcgagctgggcctggaaggggtcatcggcaagcgcctcggcagtccctatcgttcccgg
cgcagcaaggattggatcaagctcaagtgtgcccatcgtcaggaattcatcatcgtcggc
tataccccgcccaagggtggccgccagcacctgggcgcgctgctggtcgccctgcacgat
gatcaaggcgagttgcactacgccggcaaggtcggcaccggcttcacggcggcgcagctc
aagcagctgcatgagcgattccagccactgatcagcgaccggcctccggtggtggacccg
cccaagggcgcggcctatcggcaggtgacctggctcaagcccgagcagctgtgcgagatc
gcctatgccgagctgacccaggatcgcatcgtgcgccagggcgtcttccacggcctgcgc
gacgacaagccggccagcgagatcggcctcgaaacggcgacgccggcccgcgaagccgaa
cgcgccgaccgtactccgcgcaaggcgagtggcaagcaaaaggacgccgaggtggccggc
gtacgcatcagccacccggagcgggtgatcgacgacgccagcggcgctcgcaaactcgac
gtggctggctattacgccgccgtcgcggactggatcctgccacacctggccgatcgcccg
gtggccctggtgcgcacgcccgacggcatcgctggcgagcagatcttccagaagcacaaa
cagaccctggcgatcccccacatccgcgaactcgatcccgcgctggaccccggtcatgcg
ccgctgatggtcatcgacagtcgcgacgccctcatcggcgccgcccagatgggtaccgtg
gagctacatacctggaacgctaccgccgatcgcatcgagcgtcccgaccgtttcatcctc
gatctggaccccgatcccgccctgccctggtcacgcatgatggaggcggcggaactcacc
ctcaccctgctcgacgaactggacctgcaggccttcgtcaagaccagcggtgggcgcggc
ctgcacctggtagtgccgctggatcgccgccaggattgggataccgtcaaggccttcgcc
caggccgcggcccagcacctggccaataccctgcccaagctcttcgtcgccaagatgggt
gccgagaatcgccgcggccgcatcttcatcgactacctgcgcaatcgccatggcgccacc
acggtcagcgccttctcgctgcgcgcccgcccgcacctcggcgtttccgtccccgtggcc
cgcagcgagctggccaggctcgagcgaagcgaccaatggcacttcgataccctgctgcaa
cgcctcgaagggctcaaggacgatccttgggccggctacgccaaggtgcgccaggggctt
acccgggcccgacgccagcgcctgggtgtggactga

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