Pseudomonas psychrotolerans: BJP27_01305
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Entry
BJP27_01305 CDS
T05074
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppsl
Pseudomonas psychrotolerans
Pathway
ppsl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BJP27_01305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsl03400
]
BJP27_01305
Enzymes [BR:
ppsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BJP27_01305
DNA repair and recombination proteins [BR:
ppsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BJP27_01305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
APQ10208
LinkDB
All DBs
Position
complement(268645..271200)
Genome browser
AA seq
851 aa
AA seq
DB search
MARSTSEYNRKRNFDITAEPRDEDSPRPRKAKGALSFVIQKHDARRLHYDFRLELEGTLK
SWAVPKGPSLDPGEKRLAVQVEDHPLAYGSFEGSIPEGQYGAGDVIVWDRGEWQADGDAA
AGYAAGKLKFELRGEKLRGHWTLVRTRLRGHSDKPQWLLIKERDDEARDTADYEVTAAEP
DSVLSDKTLPRLDQGKTKAATKPKATQAPSRKGTAKARKAELPETLDAELATLVDSPPAG
DWLYEVKYDGYRLLARVEGDQVQLFTRSGNDWTARLPEQAKALAALGLDNAWLDGEIVVN
DAQGVSSFQALQNAFETAKDSRIAYYLFDLPYLNGADLREVPVEQRRELLGKLLEERNAS
DLLRFSAAFEVPADRILASACELGLEGVIGKRLGSPYRSRRSKDWIKLKCAHRQEFIIVG
YTPPKGGRQHLGALLVALHDDQGELHYAGKVGTGFTAAQLKQLHERFQPLISDRPPVVDP
PKGAAYRQVTWLKPEQLCEIAYAELTQDRIVRQGVFHGLRDDKPASEIGLETATPAREAE
RADRTPRKASGKQKDAEVAGVRISHPERVIDDASGARKLDVAGYYAAVADWILPHLADRP
VALVRTPDGIAGEQIFQKHKQTLAIPHIRELDPALDPGHAPLMVIDSRDALIGAAQMGTV
ELHTWNATADRIERPDRFILDLDPDPALPWSRMMEAAELTLTLLDELDLQAFVKTSGGRG
LHLVVPLDRRQDWDTVKAFAQAAAQHLANTLPKLFVAKMGAENRRGRIFIDYLRNRHGAT
TVSAFSLRARPHLGVSVPVARSELARLERSDQWHFDTLLQRLEGLKDDPWAGYAKVRQGL
TRARRQRLGVD
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggcccgctcgaccagcgaatacaatcgtaagcgcaacttcgacatcaccgccgaaccc
cgcgacgaggacagcccccgcccccgcaaggccaagggcgctctgagtttcgtcatccag
aaacacgacgcccgccgcctgcactacgacttccgcctggagctggagggcactctcaag
agctgggcggtgcccaagggccccagcctggatccgggcgagaagcggctggcggtgcag
gtggaggatcatcccctcgcctacggcagcttcgaaggcagcattcccgaggggcagtac
ggggcgggcgatgtcatcgtctgggaccgtggcgagtggcaggccgacggcgacgcggcg
gcaggctatgccgccggcaagctcaagttcgaactccggggcgaaaagctccgcggccat
tggaccctggtacgcacccggctgcgcgggcacagcgacaagccccagtggctgctgatc
aaggaacgcgacgacgaggcccgggataccgcggactacgaggtgaccgccgccgaaccc
gacagcgtcctgagcgacaagaccctgccgcgcctggaccagggcaagaccaaggctgcc
accaaacccaaggccacccaggcgcccagtcgcaagggcacggccaaggcgcgcaaggcc
gagctgcccgagaccctggacgccgagctggcgaccctggtcgatagccctccggccggt
gactggctctacgaggtgaaatacgacggctaccgcctgctggcccgggtggagggcgat
caggtccagctcttcactcgcagcggcaacgactggaccgcgcgcttgccggaacaggcc
aaggccctggccgcgctcggcctggacaacgcttggctggatggcgagatcgtggtgaac
gatgcccagggcgtgtcgagtttccaggccctgcaaaacgccttcgaaaccgccaaggac
agtcgcatcgcctattacctcttcgacctaccctacctcaacggcgcggatctgcgcgag
gtgcccgtcgagcagcgccgcgagctgctgggcaaactgctggaagaacgcaacgccagc
gacctgctgcgcttttccgcggccttcgaggtgccggccgaccgcatcctggccagcgcc
tgcgagctgggcctggaaggggtcatcggcaagcgcctcggcagtccctatcgttcccgg
cgcagcaaggattggatcaagctcaagtgtgcccatcgtcaggaattcatcatcgtcggc
tataccccgcccaagggtggccgccagcacctgggcgcgctgctggtcgccctgcacgat
gatcaaggcgagttgcactacgccggcaaggtcggcaccggcttcacggcggcgcagctc
aagcagctgcatgagcgattccagccactgatcagcgaccggcctccggtggtggacccg
cccaagggcgcggcctatcggcaggtgacctggctcaagcccgagcagctgtgcgagatc
gcctatgccgagctgacccaggatcgcatcgtgcgccagggcgtcttccacggcctgcgc
gacgacaagccggccagcgagatcggcctcgaaacggcgacgccggcccgcgaagccgaa
cgcgccgaccgtactccgcgcaaggcgagtggcaagcaaaaggacgccgaggtggccggc
gtacgcatcagccacccggagcgggtgatcgacgacgccagcggcgctcgcaaactcgac
gtggctggctattacgccgccgtcgcggactggatcctgccacacctggccgatcgcccg
gtggccctggtgcgcacgcccgacggcatcgctggcgagcagatcttccagaagcacaaa
cagaccctggcgatcccccacatccgcgaactcgatcccgcgctggaccccggtcatgcg
ccgctgatggtcatcgacagtcgcgacgccctcatcggcgccgcccagatgggtaccgtg
gagctacatacctggaacgctaccgccgatcgcatcgagcgtcccgaccgtttcatcctc
gatctggaccccgatcccgccctgccctggtcacgcatgatggaggcggcggaactcacc
ctcaccctgctcgacgaactggacctgcaggccttcgtcaagaccagcggtgggcgcggc
ctgcacctggtagtgccgctggatcgccgccaggattgggataccgtcaaggccttcgcc
caggccgcggcccagcacctggccaataccctgcccaagctcttcgtcgccaagatgggt
gccgagaatcgccgcggccgcatcttcatcgactacctgcgcaatcgccatggcgccacc
acggtcagcgccttctcgctgcgcgcccgcccgcacctcggcgtttccgtccccgtggcc
cgcagcgagctggccaggctcgagcgaagcgaccaatggcacttcgataccctgctgcaa
cgcctcgaagggctcaaggacgatccttgggccggctacgccaaggtgcgccaggggctt
acccgggcccgacgccagcgcctgggtgtggactga
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