Pseudomonas putida KT2440: PP_3260
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Entry
PP_3260 CDS
T00114
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PP_3260 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppu03400
]
PP_3260 (ligD)
Enzymes [BR:
ppu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PP_3260 (ligD)
DNA repair and recombination proteins [BR:
ppu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PP_3260 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AAN68867
UniProt:
Q88HU3
LinkDB
All DBs
Position
complement(3693666..3696167)
Genome browser
AA seq
833 aa
AA seq
DB search
MAKPLQEYARKRDFNATPEPSGKRKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YAKGKLRFRLLGEKLGGVWNLFRTHLAGKKEQWMLVKSHDAQACSETEYSIVEALPDSVL
SERTLVPCKSAAKKATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPSGDWRYEVKFD
GYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGMADFQ
ALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQNRRNTLRQLLEHNHCDVIKYSADFD
EPVQSLLDSACRLKLEGLIGKRVDSVYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSG
FGALLLALHDNDSGQLRYAGKVGTGFNATTLASIHARLKPLEIARPALPSPPAGAEARGV
HWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTVSNRNKQAKAS
ENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGGELF
FQKNAGQLYIPNVLSYEKAEAGQAAMVINRADTLLGAVQMNMLELHTWNATDKDFDKPDR
FVLDLDPDPALPWKAMVEATQLTLTLLDELGLKVFLKTSGGKGIHVVVPLTRRAGWDEVK
DFSHAIVNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRARDGLPVSV
PIWREELAQIKAANQWNITNLHEHLAEVDDPWADMGKVRQSITARMRKQLGLE
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggaatacgcgcgcaagcgcgacttcaacgccacacccgagccc
agcggcaaacgcaaacgtggcaaacgggcccatgcgctgcagttctgcatccagaaacac
gacgccagtcatttgcactacgacttccgcctggagctcgatggcaccctgaaaagctgg
gcgatccccaaaggcccgtcgttggaccccaaggtgcgccgcctggcggtgcatgtggag
gatcacccgctggactacgccgatttcgagggccatatcccggaaggccactatggtgca
ggggacgtgatcgtctgggaccgcggtatctgggagcctgaaggcgacgcgcatgaagcc
tacgccaaaggcaagctgcgattccgcctgctgggtgagaagctaggcggcgtgtggaac
ctgtttcgcacccacctggccggcaagaaagaacaatggatgctggtcaagtcgcacgac
gcccaggcgtgcagcgaaaccgagtacagcattgtcgaggccctgcccgacagcgtgctc
agcgagcgcacgctggtgccatgcaaatccgctgcaaaaaaagccactgccccgcgcagc
agccgtaaacgcgccgacaaagttcaggctgcacccttgccagcacagttacagccacag
ctggcaacgttggtggactctccccccagcggcgactggcgctacgaagtcaagttcgat
ggctaccgtattctggcccgcatcgagggccaggacatccgcctgttcacccgcaacggc
catgactggagcagcaagatgccccggcaggttgccgccctgcgcgcgctgggcatcgac
tcggcctggctcgatggcgaaatggtggtggctgatgagaatggcatggctgacttccag
gcgttgcagaacgccttcgataccgagcacgacgaacgcatcacctattacctgttcgac
ctgccatttctgggcggccaggacctgcgacagctaccgctgcagaaccgccgcaataca
ttgcgccaactgcttgagcacaaccattgcgacgtcatcaagtattccgccgacttcgac
gaacctgtccagtcactgctcgacagtgcctgccggctgaagctggaaggcctgatcggc
aagcgagttgacagtgtctacagcggccgccgtagcccggactggatcaagctcaagtgc
aagcaacgccaggagttcgtgatcgtcggctacaccgaccccaaaggcagccgcagcggc
ttcggtgccctgctgctggccctgcacgacaacgacagtggccagctgcgctatgccggt
aaggtcggtaccggcttcaatgccacgacactggccagcatccacgcgcggctcaagccc
ctggaaatcgccaggccagccctgccctcgccgcctgccggagccgaagcgcgtggtgtg
cactggctgcgaccgcagttgttggcggaagtcgcctttgcccagatgacccgtgacggc
atcgtgcgccattcggtgttccacggcctgcgcgatgacaaggcggcaaccgccattgac
ctggagcgcgccatgcccgcaaaaactgtatccaaccgcaacaagcaggccaaggcgtct
gagaacctgggtgaactgcggctgacccaccccgaccgggtcatcgaccccaccacgggt
gtgaccaagcgcgaagtcgccgagtattacgctggcatcagccagtggatcctgccacag
ctcaagcaccgcccggtggcattggtgcgcgccccggacggcctgggcggcgagctgttc
ttccagaaaaacgcgggccaactgtacatacccaacgtactcagctacgaaaaggccgag
gccggccaggcagcgatggtcatcaatcgcgccgatacgctgctgggtgcggtgcagatg
aacatgctggagctgcacacctggaacgccacagacaaggatttcgataaaccggaccgt
tttgtcctcgacctggaccctgaccctgcgctgccctggaaggccatggtggaggcgacc
caactgaccctcaccctgctggacgaactgggcctgaaggtgttcctgaaaaccagtggt
ggcaagggtattcacgtggttgtgcccttgacccggcgagccgggtgggacgaggtcaag
gacttcagccacgccatcgtcaattacctggccaagctgtttccggagcgcctgagcgcg
gtgtcggggccgaaaaatcgcgtgggacgcattttcatcgactacctgcgcaacggcaag
ggcgctaccacggcgtgcgcctattcactgcgagcccgtgacgggctgccagtatcggta
cctatctggcgtgaggaactggcgcaaatcaaggccgccaaccaatggaacatcaccaac
ctgcacgagcatctggcggaggtcgacgacccttgggccgacatgggcaaggtacgccag
tcgatcaccgcgcgcatgcgcaagcagctagggctcgaatga
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