KEGG   Pseudomonas putida DLL-E4: DW66_2974Help
Entry
DW66_2974         CDS       T03439                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppud  Pseudomonas putida DLL-E4
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppud00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    DW66_2974
Enzymes [BR:ppud01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DW66_2974
DNA repair and recombination proteins [BR:ppud03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DW66_2974
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
3221867..3224359
Genome map
AA seq 830 aa AA seqDB search
MAKPLQEYARKRDFNATPEPSGKRSRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YAKGKLRFRLQGEKLGGVWNLFRTHLAGKKEQWMLVKSHDSQARSEADYSIVDAQPDSVL
SDRTLVPRKPTAKKAAAPRRKAASKGRKVPLPAQLQPQLATLVDSPPSGDWRYEVKFDGY
RILARIDGDDVRLFTRNGHDWSGKMPRQVAALRALGLDSAWLDGEVVVAGENGAADFQAL
QNAFDTEHDEHITYYLFDLPFLGSQDLRQLPLQDRRDTLQRLLEHNESDVLKYSDDFDQP
VESLLDSACRLQLEGLIGKRVDSPYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSGFG
ALLLALHDNDSGELRYAGKVGTGFSATTLASIHARLKPLETAKPALPNPPTGAEARGVHW
LKPQLLAEVAYAQMTRDGIVRHSVFHGLRDDKPATAIDLERSMPAKTLPKRKQAKAPEAL
GELRLTHPERVVDATSGVTKREVAEYYAAVSQWILPQLKNRPVALVRAPDGLAGELFFQK
NAGQLHLPNVLSYDKAEAGQAAMVINRADTLIGAVQMNMLELHTWNATDKDFDKPDRFVL
DLDPDPALPWKAMLEATQLALTLLDELGLKVFLKTSGGKGMHLVVPLTRRASWDEVKAFS
HGIVDYLARLFPDRLSAVSGPKNRIGRIFIDYLRNGKGATTACAYTLRAREGLPVSVPIW
REELPQLKGANQWNIGNVLERLGDVDDPWADYGKTRQSITVGMRKQLGLA
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccctgcaggaatatgcgcgcaagcgcgacttcaatgccacgcccgagccc
agcggcaagcgcagccgtggcaagcgggcccacgcgctgcagttctgcatccagaagcac
gatgccagccacctgcactacgacttccgcctggaactcgatggcacgctgaaaagctgg
gccatccccaaagggccgtcgctggaccccaaggtgcgccgcctggccgtgcacgtggag
gaccacccgctggactacgccgacttcgaaggccatatccccgaagggcattacggcgcg
ggcgacgtgatcgtctgggaccggggcatctgggagcccgaaggtgatgcgcatgaggcc
tatgccaagggcaaactgcgtttccgcctgcaaggcgaaaagctcggcggtgtatggaac
ctgttccgcacccacctggccggcaagaaggagcagtggatgctggtcaagtcgcacgac
agccaggcgcgcagcgaagccgactacagcatcgtcgacgcccagcccgacagcgtgctc
agcgaccgcacgctggtgccgcgcaagccgacagcaaaaaaggccgccgcgccacgtcgc
aaagccgccagcaaaggccggaaggtgccgttgccggcgcagctgcagccacaactggcg
accttggtcgactccccgcccagtggcgactggcgctacgaggtcaagttcgacggttac
cgcatccttgcccgcatcgacggtgatgacgtgcgcctgttcacccgcaatggccatgac
tggagcggcaagatgcccaggcaggttgccgctttgcgcgcgctgggcctcgattcggcc
tggctcgatggcgaggtggtggtggctggcgaaaacggcgcggcggacttccaggcgttg
cagaacgctttcgacaccgagcatgacgagcacatcacctattacctgttcgacctgccc
ttcctgggcagccaggacctgcgccagttaccgctgcaggaccggcgagacaccctgcag
cgcctgctggagcacaacgaatcggacgtgctcaagtactccgacgattttgaccagccg
gtcgaatccctgctcgacagcgcctgccggctgcaactcgaaggcctgatcggcaagcgc
gtcgacagcccctacagcggccgccgaagccccgactggatcaagctcaagtgcaagcag
cgccaggagttcgtgatcgtcggctacaccgaccccaaaggcagccgcagcggctttggt
gccctgctgctggccttgcacgacaacgacagcggcgagttgcgctatgccggcaaggtc
ggcaccggcttcagtgcaaccacgctggccagcatccatgcccggctgaaacctttggaa
accgccaagccggccctgcccaacccgcccaccggggccgaagcccggggcgtgcactgg
ctgaaaccgcaactgctggccgaagtcgcctatgcccagatgacccgtgacggcatcgtg
cgccactcggtgttccacggcctgcgcgatgacaaaccggctaccgccatcgacctggag
cgcagcatgcccgccaagaccctgcccaagcgcaagcaggccaaggcccccgaggctttg
ggcgagctgcgcctgacccaccccgagcgggtggtcgacgccaccagcggcgttaccaag
cgcgaggtcgccgagtactacgccgctgtcagccaatggatactgccccagctcaagaat
cgcccggtggcgctggtacgtgctccggacgggctggccggggagctgttcttccagaag
aacgccggccagttgcatctgcccaacgtgctcagctatgacaaggccgaggccggccag
gcggcgatggtcatcaatcgcgccgacaccttgatcggcgcagtgcagatgaacatgctc
gaactgcacacctggaacgccaccgacaaggacttcgacaagcccgaccgcttcgtcctc
gaccttgacccggacccggcactgccgtggaaggccatgctggaagccacccaactggcc
ctcaccttgctggatgagctgggcctgaaggtttttctcaagaccagtggcggcaaaggc
atgcacctggtagtgcccctgacccggcgtgccagctgggatgaagtcaaggcattcagc
cacggcatcgtcgattacctggccaggttgttccccgacaggctcagtgccgtgtccggg
cccaaaaatcgcatcgggcgcatcttcatcgactacctgcgcaacggcaagggggctacc
accgcctgcgcgtataccctgcgcgcacgcgaaggcctgccggtatccgtgccgatctgg
cgcgaggaactgccgcaactcaagggcgccaaccagtggaacatcggcaacgtgcttgaa
cgcctgggtgatgtcgacgacccctgggccgattatggcaagaccaggcaatcgatcacc
gtgggcatgcgcaagcagctggggctggcctga

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