Pungitius pungitius (ninespine stickleback): 119215123
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Entry
119215123 CDS
T07626
Symbol
thoc2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
ppug03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119215123 (thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
119215123 (thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119215123 (thoc2)
03041 Spliceosome [BR:
ppug03041
]
119215123 (thoc2)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
119215123 (thoc2)
Spliceosome [BR:
ppug03041
]
Complex C
Other components
EJC/TREX
119215123 (thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119215123 (thoc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
119215123
NCBI-ProteinID:
XP_037322879
LinkDB
All DBs
Position
Unknown
AA seq
1562 aa
AA seq
DB search
MATLILPCEWIKNWEKSGKLEFVHLCKELTEKTDHGSEIRDIQTALYELCWQVVQGNLKL
DLVVSVLGDMMELRDYMPSILADVFSTLDLETAALEEKIKRDHYTQLVGACLFFVPDAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHLVLESIKSLIGCFNLDPNRVLDIILEVYESRSDQDEFFLSLIKSYMCEPLTLC
HILGFKFKFYQEPNEETPKSLYHIAAALLHHHLIELEDLYVHLMPVDATIIEEHKKDISE
AKQIARKLVMVVLPSEKSEDKDKEKEKEEEKNDKPPDNQKLGLLEALLRIGDWHHAQRIM
DQMPSFYASSHKAIALALCQLVHRTVEPLYRRVGLPKGARGCVIHPLRIKGAPRPAESFE
DLRRDTFSMICYLGPHLSHDAILFAKIVRLGKGFMKEYQSDSRSDVKEKMETLLSCFLSI
ADQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLLVKVKAQTV
ERAKYIMKRLTKENVKQSGRQIGKLSHSNPTILFDYMLSQIQWYDNLIVPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTN
QLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDVLLDHELALPLCLLMAQQRNGVVFLEGGEKHLKLVGHLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYAHQILSRYDELKKAEKGNRQQQKA
HKYVAACEQVMTPVHEAVVSLHPARVWDDLRPQFYATFWSLTMYDLAVPHSAYEREVNKL
KVQIRAIEENPEIPMNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNWLLA
KSTKNETITKFLQLCLFPRCIFSSIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSAIIY
TVASCTENESHRYGRFLCCMLETVTRWHSDRATYEKECVNYPGFLTIFRATGFDGGNKAD
QLDYENFRHVVHKWHYMLTKASVHCLETGDYTHIRNILIVLTKILPCYPKVLNLGQALEC
RVHKICLEEKDKRPDLYALAMGYSGRLKGQKVHMVPENEFHHKEQPARSSTPANQQNGPG
STGKPATSTSKTEEGTSEDGDRGKDKSQGTTKPVNKANSAAAKVTTSNGNGALNSTKAVK
ERDDKEKSGKEKKEKKEKTPGSTPETKAENRREKQRDERAGKEERVAREGKEKTPKADRE
KLKAEEKASKDDKAKAGNGEPMEPPRERDAIKESKSKEKGDRIAVAGSLKSPVPRLESAE
SERDHKRRKLDSHASPSHSSSVKDNSNEPKESTSKHHANYNSVTRSKSREREMEKKDSDN
TQGRSKEKKEEKDRKERKRDHALNELETSLESKRRKDENGMNSSKNSKSASPSCDSPLSV
EKEKIKRPKSSSKEKAESVKPERTSSGGKKESRHDKSEKKEKRDSSGGKEEKKHHKSSDK
HR
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacttatcctcccttgtgaatggatcaaaaactgggaaaaatcaggcaaactc
gagtttgtacatctctgcaaagaactcacagagaaaaccgatcatggaagtgagattaga
gatatacagacagccttatatgagctctgctggcaagttgtacaggggaacctgaagttg
gatcttgttgtcagcgtccttggggacatgatggaactccgagattacatgccatcaatt
ttagcagatgtgttcagtacactagatttagagacggctgcactggaagaaaaaatcaaa
cgcgaccattacacacaactggtgggagcatgtttgttttttgttccggatgccatccta
aaagagaggctggatccagaaacgcttgaatctcttggacttataaaacaagctcatcag
ttcaatcagaagattgtaaaaatcaagactaaactattttacaagcaacagaagtttaac
ttgctgagggaggagaatgagggctatgccaaactaatcactgagctgggccaggacctc
tcaggcaacatcaccagccaccttgtcctggagagcatcaagtccctcataggatgtttc
aacttggaccctaatcgtgttttggacatcatcttggaggtgtatgagagtcggtctgac
caagatgagttcttcctgtctctcatcaaatcctacatgtgtgagccactcactctttgc
cacatcctgggttttaagttcaaattctaccaggagcccaacgaggaaacccccaagtca
ctttaccacattgctgctgccctgcttcaccatcacctaattgagctggaagatctctat
gtacatctcatgccagtagatgccaccatcatagaggaacacaaaaaagatatttcggag
gccaagcagatcgcccgcaagcttgttatggttgtgttgccgtcagagaaaagtgaagat
aaagacaaggagaaagaaaaggaggaagagaagaatgataagccccctgataaccagaag
ctgggcctgttggaggcgttgcttagaattggagactggcaccacgcccagagaattatg
gaccagatgccgtccttctacgcttcctctcacaaggccattgcgctggcactctgccag
cttgtgcatcggactgtggagcctctttacagaagggtcggcctcccaaaaggggcgaga
gggtgtgtgatacatccactgaggatcaagggggcccctcggccagccgagagcttcgag
gacctacgaagggacacgtttagcatgatctgctacctgggccctcatctctcccacgac
gcaattctttttgccaagattgtgcgtctgggcaagggtttcatgaaagagtaccaaagt
gatagccgatctgatgtcaaagaaaaaatggaaactcttttgagttgtttcctgagcatt
gcagaccaggttctactcccttccctctctctgatggagtgtaacgcgtgcatgtctgag
gagctgtggggtctcttcaaactcttcccctaccagcacaggtaccggttatatgggcag
tggaagaacgagacgtacaccagccatccactgttggtcaaagtcaaagcgcaaactgta
gaaagggccaaatacattatgaagcggttgaccaaagaaaatgtgaaacaatctggaaga
cagattggcaagctgagccatagcaatcccaccatcctctttgattatatgctttctcag
atccaatggtacgacaaccttatcgttccagtggttgactccttgaaatacctcacatct
ctcaactacgatgtcttggcctattgcatcattgaggctctagccaatccggagaaggag
aagatgaaacatgacgacacaaccatctcctcgtggcttcagagcctggcaagtctgtgt
ggagccgtgttcagaaaatacccaattgagttggctggccttcttcaatatgtcacaaat
cagctgaaagcagggaagagttttgacctgttgatcctgaaagaggtggtgcagaaaatg
gccggcattgagatcaccgatgagatgacctcagagcagttggaagccatgaccggaggg
gagcaacttaaagccgaggggggctactttggccagatcaggaacactaaaaagtcatcg
cagcgtctgaaggatgtgctgcttgaccacgagttggccctgcctctgtgtttactcatg
gcccagcaacggaacggtgtggttttcttagagggcggagagaagcaccttaaacttgtt
ggccatctgtatgaccagtgccacgacaccttggtgcagtttggtggttttctggcctcc
aaccttagcactgaggactacatcaagcgagttccctccattgacatcctctgtaaccag
ttccacactccacacgatgccgccttctttctgtctcggccaatgtacgcccatcagatt
ttgtctaggtacgacgagttgaagaaagcagagaaaggcaaccggcagcagcagaaggca
cacaagtatgtggcagcttgtgagcaggtgatgacaccagtgcatgaggcagtagtgtca
ctccacccggcaagggtctgggacgacctccgcccgcagttctacgctaccttctggtcc
ctcaccatgtatgacttggctgttccacattctgcctacgagcgtgaggtcaacaagctc
aaggtccagatcagggccatcgaggagaatccagagatacccatgaataagaaaaagaag
gagaaggagcgctgcactgccctgcaagaaaaactgcaggaggaggagaagaagcagctg
gagcacgtccaacgggttctgcaccgcctcaaactggaaaaagataactggttgttggcc
aaatctacaaagaatgagaccataacaaagtttctgcagctgtgtctgttcccccgctgc
atcttctcgtccatcgacgcagtgtactgtgcacgcttcgtggagttggtccaccagcag
aagacgcccaacttctgcaccctcctgtgctacgacagggtgttttccgccatcatttac
actgtagccagctgtacggaaaacgagtcccaccgctacggacgcttcctgtgctgcatg
ctggagacggtgacccgctggcacagcgaccgtgccacctatgagaaggagtgtgtcaat
taccctggcttcctgaccatcttcagagccacgggcttcgatggtggaaacaaggcggat
cagctggactatgagaacttcaggcatgtagtgcacaaatggcactacatgctgactaaa
gcttcagtccactgtctggagacaggagattacacccacatccggaatattctcatcgtt
ctcaccaagatcctgccctgctaccccaaagtcttgaacctaggccaggcgcttgagtgt
cgcgtccacaagatctgccttgaggagaaggataagaggccagacctctatgccttagca
atgggttattcaggtcggttgaaaggccagaaggtgcacatggtcccagagaatgagttt
caccacaaggagcagccagcccgcagttccactcctgccaatcaacagaacggccccggc
agcacaggcaagcctgccaccagcacaagcaagacagaggaggggacgtccgaggatggt
gatcggggaaaggataaatctcaggggaccacaaagccagtgaacaaagccaacagtgca
gcggccaaagtgaccaccagcaacgggaacggtgctctcaacagcaccaaagccgttaaa
gaacgggacgacaaagagaagagcggaaaggagaaaaaagagaaaaaagaaaagacacca
ggcagcactcccgagacaaaggcagagaaccgtcgggagaagcagagagacgagagagca
gggaaggaggagcgggtggcacgcgagggtaaggagaagacccccaaggcagacagggag
aaactgaaggcggaggaaaaggccagcaaagacgacaaggccaaagccggcaacggggag
cccatggagccgcccagggagcgtgatgccatcaaggagtccaagagcaaggagaaagga
gacagaattgcagtggctgggtccctaaagtcaccggttcccagattggaatcagccgaa
tctgagagggatcacaaaagacgaaagctcgacagtcacgcttctccgtcacactcctcg
tctgttaaggacaatagcaacgaacccaaggagtcaacatccaagcaccacgccaactac
aattcagttacccggtcgaagagcagagagagggagatggagaagaaagattcagacaac
acacagggccgatccaaagagaagaaggaagaaaaggatcggaaagaaaggaagagagac
catgctctcaatgagcttgagacaagcttagagtccaaacgtcggaaggatgagaacgga
atgaattcctccaaaaacagcaagagcgcgagtccttcctgtgactctccactttcagtc
gaaaaagagaagatcaagaggcccaagtcgtccagtaaagagaaggctgagtctgtgaaa
cccgagcggacttcctctggaggcaaaaaggagtccagacacgacaaatctgaaaagaag
gagaagagggacagcagcggaggaaaagaagagaaaaagcatcataaatcctctgacaag
cacagataa
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integrated database retrieval system
