Pseudomonas putida HB3267: B479_22890
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Entry
B479_22890 CDS
T02389
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ppuh
Pseudomonas putida HB3267
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppuh03016
]
B479_22890 (truB)
Enzymes [BR:
ppuh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
B479_22890 (truB)
Transfer RNA biogenesis [BR:
ppuh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
B479_22890 (truB)
Prokaryotic type
B479_22890 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
PUA_3
Motif
Other DBs
NCBI-ProteinID:
AGA75467
LinkDB
All DBs
Position
complement(5046890..5047807)
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AA seq
305 aa
AA seq
DB search
MAQVKRIRRNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFG
EATKFSQYLLDSDKGYETVMQMGQTTNTGDAEGEVLQTREVTVGRADIEALLPRFRGQIS
QIPPMYSALKRDGQPLYKLARAGEVVEREARSVTIGRLELLECEGTRARLSVGCSKGTYI
RTLVEDIGEALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHAEGGNEALDRFLMPSDS
GLQDWPLVCLSEHSAFYWLHGQAVRAPDAPQFGMVRVQDHNARFIGIGEVSEDGRIAPRR
LIRSE
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtggcccaggtcaaacgtatccgccgcaacgtcagcggcatcatcctgctcgacaagccg
ctgggcttcacctccaacgccgccctgcaaaaggtgcgctggctgctcaatgcggaaaag
gccgggcacaccggcagcctcgatccgctggcaaccggcgtgctgccgctgtgctttggc
gaagcgaccaagttttcgcagtacctgctcgattccgacaagggctacgaaacggtcatg
cagatggggcagactaccaacaccggcgatgccgaaggtgaagtgctgcagacccgtgag
gtgaccgttggtcgcgccgacatcgaggccctgctgccgcgttttcgtggccagatcagc
cagataccgccgatgtactcggcgctcaagcgtgatggccagccgctttacaagctggca
cgtgcaggagaggtagtggagcgcgaggcgcgttctgttacaattggccgcttggagttg
ctcgagtgcgaaggcacccgtgcacggctgagcgtaggatgcagcaaaggcacctatatc
cgcaccctggtggaggatatcggtgaggcccttggctgcggcgcctatgtcgccgagctg
cgcaggacccaggccgggcctttcgcgctggcacagacggtcaccctcgaggaactcgaa
caggcccacgccgaaggtggcaacgaagcgctcgaccgcttcctgatgccttcggacagc
ggcctgcaggactggccactggtgtgcctgtccgagcacagtgcgttttactggctgcat
gggcaggcggtacgcgcgccggacgcgccgcaatttggcatggtccgggtacaggatcac
aacgcgcgcttcatcggtatcggtgaagtgagcgaagacgggcgcattgcgccgcgtcga
ctgattcggtcggaatga
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