Pandoraea pulmonicola: RO07_19785
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Entry
RO07_19785 CDS
T03553
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppul
Pandoraea pulmonicola
Pathway
ppul03030
DNA replication
ppul03410
Base excision repair
ppul03420
Nucleotide excision repair
ppul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RO07_19785 (ligA)
03410 Base excision repair
RO07_19785 (ligA)
03420 Nucleotide excision repair
RO07_19785 (ligA)
03430 Mismatch repair
RO07_19785 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppul03032
]
RO07_19785 (ligA)
03400 DNA repair and recombination proteins [BR:
ppul03400
]
RO07_19785 (ligA)
Enzymes [BR:
ppul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RO07_19785 (ligA)
DNA replication proteins [BR:
ppul03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RO07_19785 (ligA)
DNA repair and recombination proteins [BR:
ppul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RO07_19785 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RO07_19785 (ligA)
MMR (mismatch excision repair)
DNA ligase
RO07_19785 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RO07_19785 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AJC22165
UniProt:
A0A378YYP6
LinkDB
All DBs
Position
2590698..2592815
Genome browser
AA seq
705 aa
AA seq
DB search
MSQTSATGQGAKAHTAADATAAAKRAAELRIELARYNRAYYEDDAPLVPDAEYDRLFGEL
VALENAFPELQRPDSPTQRVGGKPVEGFAPVVHRVPMLSLNNAFTDEDVEAFDRRVADGL
RGAGDAGASSGDLFGAPVEYAAELKFDGLAIALRYEHGVLVQAATRGDGTTGEDVTANVR
TIKKIPLNLRTQTPPEVLEVRGEVLMFRADFDKLNRAQEAAGEKVFVNPRNAAAGGLRQL
DSRITARRPLSFFAYGVGELVGVPMPETHSALLDWYVELGIPVNERREVVQGAAGLLAFY
RAVGEARESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTTLLDIEVQ
VGRTGAITPVARLAPVFVGGATVTNATLHNEDEIRRKDVMIGDTVIVRRAGDVIPEVVGS
ILDRRPADARAFVMPTECPVCGSAIEKLPDEVIARCTGGLICAAQRKQALLHFAQRRALD
IEGLGDKLVEQLVDQQIIRTPADLFKLGVAKLAALDRMADKSASNLVASIDKARHTTLAR
FIFALGIRHVGEATAKDLARHFGKLDNLIAVCKRDSDLTELLAVPDVGPVVAESINNFFC
EDHNVEVIEQMRAAGVTWPESEPAAVAPLPLAGKTFVLTGTLPTLSRDEAKAMLEERGAK
VAGSVSAKTNYVVAGAEAGSKLTKAEALGVPVLDEDAMRAMLAAL
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaacttccgctacgggtcagggcgcgaaagcccacacggctgccgacgccacg
gcggcagccaagcgcgccgccgagctgcgcatcgaactggcacgttacaaccgcgcctac
tatgaagacgacgcaccgctcgtccccgatgccgagtacgaccgcctgttcggcgaactg
gtcgcactcgagaacgctttcccggaattgcaacgtcccgattcgcccacccagcgcgtg
ggcggcaagccggtggaggggttcgcgcccgtcgtgcatcgtgtgccgatgctctcgctc
aacaacgcctttaccgacgaggatgtcgaggcgtttgaccggcgtgtggccgacggattg
cgcggggcgggggatgccggtgcgtcgtccggcgatctattcggtgcgcccgtcgaatat
gcggcggaactgaagttcgacggccttgcgattgccctgcgttatgagcatggcgtactt
gtgcaggcggcgacgcgcggcgacggcacgaccggcgaggacgtcaccgcgaacgtccgt
actatcaagaagattccccttaacctgcgcacgcagacgcctcccgaagtgctggaggtg
cgcggcgaagtgctgatgttccgcgccgacttcgacaagctcaaccgggcccaggaggcg
gcgggcgagaaggtgttcgtcaatccgcgcaatgcggccgcaggcggtctgcgccagctc
gattcccggattacggccaggcgcccgctgtcgttcttcgcttacggcgtgggcgagttg
gtcggggtgccgatgcccgagacgcattcggcgctgctcgactggtatgtcgaactcggc
attccggtcaacgagcgccgtgaggtggtgcagggcgcggccggcctgctcgcgttctac
cgagcggttggcgaggcgcgcgagtcgctgccgtacgacatcgatggcgttgtttacaag
gtgaatcgccgtgacgagcaagaccggctcggcttcgtctcgcgggcgccacggtttgcg
ctcgcgcataagttcccggcgcaagaggcgctcacgacgctgctcgacatcgaggttcag
gtcggccgcacgggggcgatcacgccggtggcgcgtctggcgccggtgttcgtgggcggc
gcgaccgtcacgaatgcgaccttgcacaacgaagacgaaattcgccgcaaggacgtgatg
atcggcgatacggtcatcgtgcggcgtgcgggagacgtgattcccgaggtcgtcgggtcg
atactggatcgccgcccggccgacgcgcgggcgttcgtgatgccgaccgaatgtcctgtc
tgcggctccgcaatcgagaaactgcccgacgaggtgatcgcgcgatgcacgggcgggctg
atctgcgcggcgcagcgcaagcaggcgctgctccacttcgcgcagcgccgggcgctcgat
atcgaagggctgggcgacaagctggtggagcaactggtcgatcagcagatcattcgcacg
ccggcggatctgttcaagctcggcgtggcaaaactcgccgcgctcgatcgcatggccgat
aagtcggcgtccaatctggtggcgtcgatcgacaaggcgcgtcacacgacgctcgcccgc
tttatttttgcgctgggcattcgccacgtgggcgaggcgacggcgaaggatctcgcccgc
cacttcggcaagctcgacaacctgatcgccgtatgcaagcgcgattcggatctcacggaa
ctgctggcggtgcctgacgtcggacccgtggtggccgagtcgatcaacaatttcttctgc
gaagatcataatgttgaagtgatcgagcagatgcgtgccgcgggcgtgacgtggcccgaa
tcggaaccggccgcggtggcgccgttgccattggccggcaagacgttcgtgctcaccggc
acgttgccgacgctttcgcgcgacgaggccaaggcgatgctggaagagagaggggcgaaa
gtggcgggctcggtgtccgcgaagacgaactacgtcgtcgcgggtgccgaagccggcagc
aaactgacgaaagccgaggcactgggtgtgcctgtgctcgacgaggacgctatgcgcgcc
atgttggccgcgctttga
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