Pandoraea pulmonicola: RO07_22860
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Entry
RO07_22860 CDS
T03553
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppul
Pandoraea pulmonicola
Pathway
ppul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RO07_22860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppul03400
]
RO07_22860
Enzymes [BR:
ppul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RO07_22860
DNA repair and recombination proteins [BR:
ppul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RO07_22860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AJC22601
UniProt:
A0A378ZCW9
LinkDB
All DBs
Position
3394442..3397906
Genome browser
AA seq
1154 aa
AA seq
DB search
MSSANALSRNTVPVPLVKAGQRYAFAGSHASSDALLIARYFEENRERVPLLAVVCAQATD
ALRLQQELKWCAPEARVRLLPDWETLPYDTFSPHQDLISERLATLHDLGEKRCDIVLVPA
TTALYRMAPASFMAAYTFFFTQGERLDEARLKSQLTLAGYEHVSQVMRPGEYCVRGGLID
LYPMGSALPYRLDLFDDTIDSIRAFDPDTQRSLYPVKEVRLLPGREFPFDEPARTAFRGR
WREVFEGDPSRSPIYKDIGSGVPSAGIEYYLPLFFEETATLFHYLPADAQLVFVGDLEAA
IHRFWNDTRQRYNFLSHDRERPVLPPEQLFLLDQDFFTLAKPFARLTLPTPGDGTWAIAL
PPLAINRRADDPLAALRAYLARTPARVLLCTDSAGRRETLLQLLHDNDLRPVSVESFEDF
LTSDARFAIGVAPLAAGFLLPTEDLAFVTENELYEGLARRAGKRRQEQATSVDSMVRDLA
ELKVGDPVVHSQHGIGRYQGLVSMDLGEGETEFLHLEYSGDSKLYVPVSQLHLISRYSGA
DPDTAPLHSLGSGQWERAKRRAAQQIRDTAAELLNLYARRAARSGYAFELSPRDYEKFAD
SFGFEETPDQAAAIAAVMSDMTSGRPMDRLVCGDVGFGKTEVALRAAFIAVLDGKQVALL
APTTLLAEQHAQTFSDRFADWPVRIAELSRFKTAKEVNASVKAINEGQVDIVIGTHKLLS
NDIQFQRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRKAQLEALVPE
ARIVVAHGQMHERDLERVMRDFVTQRANVLLCTTIIETGIDVPTANTILMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPKALTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGA
GEVLGDKQSGEIHEIGFQLYTDMLADAVNALKAGREPDLTAPLAATTEINLHVPAILPND
YCGDVQERLSLYKRLANGTHADAIDTIQEELVDRFGKLPQQAQALIETHRLRLLARPLGI
TKIDAGEEAIALQFEPTPAVDPMRIIELVQKHRHIKLAGQDKLRIEAKHAQLTDRVRAIK
ETLRALSAPGARAA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgccaacgccctatcccgtaataccgtgcccgtgccgctcgtgaaagcggga
cagcgctatgcctttgccggctcgcacgcctcgagcgacgccctgctcatcgcccgctac
ttcgaagaaaaccgcgaacgcgtgccgctgctcgccgtcgtgtgcgcgcaggcgaccgac
gcactgcgtctgcagcaggagctcaagtggtgcgcgcccgaggcgcgcgtgcgcctgctg
cccgattgggaaacgctgccgtacgacacgttttccccgcaccaggaccttatctcggag
cgtctggccacgctgcacgaccttggcgagaagcgttgcgacatcgtgctggtgccggcc
accaccgcgctctaccgcatggcccccgcgagtttcatggcggcctacacgttcttcttc
acgcaaggcgaacggctcgacgaagcgcgcctgaagtcgcagctcacgctcgccggctat
gagcacgtgagtcaggtcatgcgccccggcgaatattgcgtgcgcggcggcctgatcgat
ctctacccgatgggctcggccctgccctatcgcctcgatctgttcgacgacacgatcgac
agcatccgtgcgttcgatccggacacacagcgcagcctgtacccggtcaaggaggtgcgt
ctgctgccgggtcgtgaatttccgttcgacgaaccggcccgcacggcctttcgcggccgc
tggcgcgaagtcttcgagggcgacccgagccgcagcccgatctacaaggacatcggcagc
ggcgtgccctcggcgggcatcgagtactacctgccgctgttcttcgaagaaaccgccacg
ctgttccactatttacccgccgacgcgcaactggtcttcgtgggcgatctggaagcggcg
atccatcgtttctggaacgacacgcgtcagcgctacaacttcctgtcgcacgaccgcgaa
cggcccgtactgccgccggagcaactgttcctgctcgatcaggacttcttcacgctcgcc
aagccgttcgctcgactgaccctgccgacgccgggcgacggcacctgggcgatcgcgctg
ccgccgctcgcgatcaaccgtcgcgccgacgatccgctcgccgcgttgcgcgcctatctc
gcccgcacacccgcccgcgtgctgctgtgcaccgactccgccggccgtcgcgaaacgctg
ctgcaactgctgcacgacaacgatttgcgcccggtctccgtcgaatcgttcgaagatttc
ctcacgtccgacgcgcgctttgccatcggcgtcgcgccactcgccgccggtttcctgctg
ccgacggaagatctcgccttcgtcaccgagaacgagctttacgagggcctcgcgcgccgt
gccggcaaacgtcgccaggagcaggcgacctcggtcgactcgatggtgcgcgatctcgcc
gagctcaaggtcggcgatccggtggtgcacagccagcacggcatcggtcgctaccagggc
ctcgtgagcatggacctcggcgaaggcgaaaccgagtttctgcacctcgaatactcgggc
gacagcaagctgtatgtgcccgtctcgcaactgcatctgatctcgcgctacagcggcgcc
gatcccgacaccgcgccgttgcactcgctcggctccggccagtgggagcgcgccaagcgc
cgcgctgcgcaacagatccgcgacaccgccgccgaactgctcaatctgtacgcgcgtcgc
gccgcgcgctcggggtatgcgttcgaactgtcgccgcgtgactacgagaagttcgccgac
agcttcggcttcgaggagacgccggaccaggccgccgccatcgccgccgtgatgagcgac
atgacgagcgggcgtccgatggaccgactggtatgtggcgacgtcggcttcggcaagacc
gaagtggcgctgcgcgcggccttcatcgccgtgctcgacggcaagcaggtcgccctgctc
gcacccacgacgctgctcgccgagcaacacgcgcaaaccttctccgaccgcttcgcggac
tggccggtgcgcatcgccgaactgtcgcgcttcaagaccgcgaaggaagtgaacgcgagc
gtgaaggcaatcaacgagggacaggtcgacatcgtgatcggcacgcacaagctgctctcg
aacgacatccagttccagcgcctcggactcgtcatcatcgacgaggaacaccgtttcggg
gtgcgccagaaggaaaccctcaaggcgctgcgcgccgaagtggacgtgctcacgctcacc
gccacgccgatcccgcgcacgctgggcatggcgctcgaggggctgcgggacttttcggtc
atcgccaccgcgccacagaagcgcctcgcgatcaagacgttcgtgcgacgcgaggaagac
ggcgtgatccgcgaggccatgctgcgcgaactcaagcgcggcgggcaggtgtatttcctg
cacaacgaagtcgagaccatcgagaaccgcaaggcgcaactggaagcactcgtgcccgag
gcgcgcatcgtcgtcgcgcacgggcagatgcacgagcgcgatctggagcgcgtgatgcgc
gacttcgtcacgcagcgcgccaacgtgctgttgtgcacgaccatcatcgagaccggcatc
gacgtgcccacggccaacacgatcctgatgcatcgcgcggacaagttcggtctcgcacag
ttgcaccagttgcgtggccgcgtgggccgctcgcaccaccaggcatacgcgtatctgctg
gtgcacgatccgaaggcactgaccaagcaggcgcagcgccgtctggaagcgattcagcag
atggaggaactcggcgcgggcttctatctggccatgcacgatctggagattcgcggcgcg
ggcgaagtgttgggcgacaagcagtcgggcgagattcacgagatcggcttccagctctat
accgacatgctggccgacgccgtgaacgcgctcaaggccggccgcgagccggatctcacc
gcgccactggccgccacgacggaaatcaacctgcacgtgccggccattctgccgaacgat
tactgcggcgacgtccaggagcgtctctcgctctacaagcgcctcgccaacggcacccac
gccgacgccatcgacacgatccaggaagagctcgtcgaccgcttcggcaagctgccgcag
caagcgcaggcgctcatcgagacacaccgcctgcgcctgctggccaggccgctgggcatc
accaagatcgacgcgggcgaggaagccatcgcgctgcagttcgagccgaccccggccgtc
gatccgatgcgcatcatcgaactcgtgcagaagcatcgccatatcaagcttgccggtcag
gacaagctgcgcatcgaggccaagcacgcccaactgaccgaccgcgtacgcgccatcaag
gagacgctgcgcgcgctgagcgcccccggcgcacgcgcggcctga
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