Pseudomonas parafulva: NJ69_03110
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Entry
NJ69_03110 CDS
T03520
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppv
Pseudomonas parafulva
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppv03019
]
NJ69_03110
Enzymes [BR:
ppv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NJ69_03110
Messenger RNA biogenesis [BR:
ppv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NJ69_03110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_25
ResIII
NACHT
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AIZ32082
UniProt:
A0A0A7JI13
LinkDB
All DBs
Position
694043..697948
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDTLLHTLDHAMLADRHRLRRQLHELRKRPDEAKLAQWAQKVQASCAQVTARQQS
VPSIRYDDNLPIAAKRDEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVATRVAEELGTPLGALVGYQVRFEDQSDANTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKLIITSATIDLERFSQHFDGAPII
EVSGRTYPVDTWYRPLTSEQDEEGNVVEDDLSVDQAILATLDEIAAHERSQGKGPGDVLV
FLPGEREIRDAAEILRKAQLRHTEILPLYARLTPAEQQKIFQSHSGRRVVLATNVAETSL
TVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSEE
DFNGRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPLGRQLARLPIDPRLGRMLLEGARQGSLQEVLIVASALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKQFLNYLRLREWRDAHRQ
LSLICRDLQLTVNKEPCDYPRLHKAILSGLLSQIGHKAEEGDYQGARQRRFWVHPSSGIG
RKRPQWLMAAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLIIVGRRPVHFGPIDPATSRELFIREGLVGGEIQSRAKCLAANKRLLEQLDELEA
KARRRDILADEETLYAFYEARLPQEIHQSATFDSWYRMNSQKDADLLIMREEDVLAREAS
EVTAAQYPDHLQVGDLRLPLSYHFEPNHPRDGVTVRVPAPLLPTLPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKAALARLSFGQGALPQALGHELLRMTGARVSDEAWA
EAAGQVEGHLRMNVEVVDGQGKFLGEGRDLAELTARFAAASQAALALPRTEKTEQPVQAK
AFCEVAQTAQQKIAGLSLTVYPALVEDAGRVREGRFSTQAEAQFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYRELGRIDALVEDILLASLDSCVLEGETTLPRDGAALASLAE
RKRGDWTEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLTNLVYPGFVR
ETPTQWFKELPRYLKAVELRLEKLGAQVQKDRVWSGELGTLWTQYKARADKHAQEGKRDP
ELTLYRWLLEEYRVSLFAQQLGTKVAISDKRLSKQWALVEG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccacgccatcgacacactgctgcacaccctcgaccacgccatgctcgccgac
cgccaccgcctgcggcggcaattgcacgagctgcgcaagcgccccgatgaggccaagctg
gcgcagtgggcgcagaaggtccaggcctcctgcgcccaggtcaccgcgcgccagcagagc
gtgccgagcatccgctacgacgacaacctgcctattgccgccaagcgcgacgagatcaag
aaagccctggccgaacaccaggtgctggtcatcgccggcgagaccggctcgggcaagacc
acccagttgccgaagatctgcctggagctgggccgcggcagccatggcctgatcgcccac
acccagccacggcgaattgccgcgcgcagcgtcgccacgcgggtggcggaggaactgggc
acgcccttgggggcgctggtcggctaccaggtgcgcttcgaagaccagagcgatgccaac
accctggtcaagctgatgaccgacggtatcctgctggccgaaacccagcatgaccgcttc
ctcgagcgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaacatcgac
ttcctgctcggctacctcaagaccctgctgccgcgccgtcccgacctcaagctgatcatc
acctcggcgaccatcgacctggagcgcttctcccagcacttcgacggcgcgccgatcatc
gaggtgtccgggcgcacctacccggtggacacctggtatcgcccgctgaccagcgagcag
gacgaggaaggcaacgtggtcgaggacgacctcagcgtcgatcaggcgatcctcgccacg
ctggacgaaattgccgcgcacgagcgcagccagggcaagggcccgggcgatgtgctggtg
ttcctgcccggcgagcgcgagattcgcgacgccgccgagatcctgcgcaaggcgcagttg
cgccataccgagatcctgccgctgtacgcgcggctcaccccggccgaacagcagaagatc
ttccagtcccacagcggccgacgcgtggtgctggccaccaacgttgccgaaacctcgctg
acggtgcccggcatccgctacgtgatcgacagcggcaccgcccgtatcagccgctacagc
taccgcgccaaagtccagcgcctgcccatcgaggccgtgtcgcaagccagcgccaaccag
cgtaaagggcgctgcggacgggtcgagccggggatctgcatccgcctgtacagcgaagag
gatttcaacggccgcccggcgttcaccgatcccgagatcctgcgcaccaacctggcggcg
gtgatcctgcagatgttgcacctgcgcctgggtgccatcgacgccttcccgttcatcgaa
ccgccggatggcaaggccatcagcgacggtttcaacctgttgcaggagctgtcggcggtc
aaccgcgagaaccagttgaccccgctgggtcgccagctggcgcgcctgccgatcgaccca
cgcctgggccgcatgctgctcgaaggcgcccgccagggcagcttgcaggaagtgctgatc
gtcgccagcgcgctgtcggtgcaagacccgcgcgaacgtccgccggagcgccagcaggcc
gccgaccaggcccatgcccagtggaaggacgtcgattcggacttcgccgcgctggtcaac
ctgtggcgcggcttcgaggagcagcgccaggccctcaccgccaatccgctgcgcaactgg
tgccgcaagcagttcctgaactacctgcgcctgcgcgagtggcgcgatgcccaccggcag
ttgtcgctgatctgccgcgacttgcagctgacggtgaacaaggagccgtgcgactacccg
cgcctgcacaaggcgatcctcagcggcctgctcagccagatcggccacaaggccgaagag
ggcgactaccagggcgcgcgccagcgccgcttctgggtccatccgtcctccggcatcggc
cgcaagcgcccgcaatggctgatggcggcggaattggtcgagaccaccaagctgtacgcg
cgcatggtggccaagatcgagccggactggatcgaaccgctggccggccacctgatcaag
aagaaccacttcgagccgcactgggagaagaagcgtggccaggtggtggcttacgagcag
atcaccctgtacggtctgatcatcgtcggccgtcgcccggtgcatttcgggccgatcgat
ccggcgacctcacgcgagctgttcatccgcgaagggttggtgggcggcgaaatccagtcc
agggccaagtgcctggcggccaacaagcgcctgctcgaacaactcgacgaactggaagcc
aaggcgcgccgacgcgacatcctggccgacgaggaaaccctctacgccttctacgaggcg
cgcctgccgcaggagatccaccagagcgcgaccttcgacagttggtaccggatgaacagc
cagaaggacgccgacctgctgatcatgcgcgaggaagacgtgctggcccgcgaagccagc
gaagtcaccgccgcgcagtacccggatcacctgcaggtgggcgatctgcgcctgccgctg
agttaccacttcgaacccaatcacccgcgcgacggggtcaccgtgcgggtgccggcgccg
ttgctgccgaccttgccgggcgagcgcctggagtggctggtgccggggctgctggaggcc
aagtgcgtggcgttggtgcgtaacctgcccaaggcgctgcgcaagaacttcgtgccggtg
ccggacttcgtcaaggccgcgctggcgcgcctgagcttcggccagggtgcgctgccccag
gcgctgggtcacgagctgttgcgcatgaccggcgcccgcgtgtccgacgaagcctgggcc
gaagcggccgggcaggtcgaagggcacctgcgcatgaatgtcgaagtggtcgatggccag
ggcaagtttctcggcgagggccgcgacctggccgaactcaccgcccgcttcgccgccgcc
agccaggcggcgctggccctgccacgcactgaaaagaccgagcagccggtgcaggccaag
gccttctgcgaagtggcgcagaccgcccagcagaagatcgccggcctgtcgctgaccgtg
tacccggccttggttgaagacgccgggcgtgtgcgcgaggggcgcttctcaacccaggcc
gaagcccaattccagcaccgccgtgccctgcagcgcctgttgctgcagcagctggccgag
cccgccaagttcctgcgcggcaagctgccggggctgaccgaactggggctgctgtaccgc
gagctgggccgcatcgacgcgctggtcgaagatatcctgctggccagcctcgacagctgc
gtgctggaaggcgaaaccacgttgccgcgagacggcgccgcgctcgcttcgctggccgag
cgcaagcgcggtgactggaccgagcatgccgagcgcctggcgcgccagacgctggaggtg
ctcaagctctggcacgggctgcagaagcgcttcaagggcaagatcgacctgagccaggcc
gtggccttgaacgacatcaagcagcagttaaccaacctggtctacccaggcttcgtgcgc
gaaaccccgacgcagtggttcaaggagctgccgcgctacctcaaggccgtcgaactgcgg
ctggagaagctgggcgcgcaggtgcagaaggaccgggtgtggagcggcgagctgggcacc
ctgtggacccagtacaaagcccgtgccgacaagcacgcccaggagggcaagcgcgatccg
gagctcacgctctaccgctggctgctggaggagtaccgggtgtcgctgttcgcccagcaa
ctggggaccaaggtggcgatttcagacaaacgtctgagcaagcaatgggcgctggtggag
ggttaa
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