KEGG   Pseudomonas parafulva: NJ69_06730
Entry
NJ69_06730        CDS       T03520                                 
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppv  Pseudomonas parafulva
Pathway
ppv03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NJ69_06730 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppv03400]
    NJ69_06730 (ligD)
Enzymes [BR:ppv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NJ69_06730 (ligD)
DNA repair and recombination proteins [BR:ppv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NJ69_06730 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AIZ32713
UniProt: A0A0A7JJE5
LinkDB
Position
complement(1528505..1530982)
AA seq 825 aa
MAKPLQEYQRKRDFKATPEPSGKGRRQAADHALHFCIQKHDASHLHYDFRLELDGALKSW
AVPKGPSLDPSVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGVWQPEGDPQAA
YAKGKLRFRLQGEKLGGTWNLFRTRLEGKKEQWMLVKSEDDHARSEDDYSIVEDQPDSVV
SDRTLAPRTRNTAKSTPARAKKASLPRILQPQLATLVDAPPAGDWRYEVKFDGYRILARI
DGQDVRLFTRNGHDWSARMPRLVDALRALSVDSAWLDGEVVVNGDDDVADFQALQNAFDR
DDDHAIRYYLFDLPFLGGKDLRPVPLSQRRDALQQLLANDASDVLHYSGDFDQPLDSLLD
SACRLGLEGLIGKRADSPYSGQRSRDWIKLKCTRRQEFVIVGYTDPKGSRTAFGALLLAL
HDADSGELRYAGRVGTGFSAATLKTIHAQLKPLHSAKPALAKPPSGAQAHGVHWLKPRLL
AEVAYAQMTRDGIVRHAVFHGLRDDKPATAIDLEQPMPKPAAKRRKAEPEALGDLHLTHP
DRVIDATTGVTKRQVLEYYAQVSEWLLPQLKDRPVALVRAPEGLSGELFFQKHAGQLHLP
HVRTFDKAQAGQAAMVLNRVDSVLGAVQMNTLEFHTWNATTRDFDKPDRLVLDLDPDPAL
PWKAMVEATQLTLTLLEELGLKVFLKTSGGKGMHLVVPLTRRASWEQVKAFSHALVQHMA
DLFPERFSAVSGPKNRVGRIFIDYLRNAQGATTVSAYSLRARDGLAVSVPIWPEELAQLK
GADQWTLVNLHERLADLDDPWAQMSMTRQSITARMRKQLGMDATA
NT seq 2478 nt   +upstreamnt  +downstreamnt
atggccaagccgctgcaggaataccagcgcaagcgcgatttcaaggccacgcccgagccc
tctggcaagggccgtcgccaagccgcagaccatgcgctgcatttctgcatccagaagcac
gacgccagccacctgcattacgacttccgcctggagctggacggtgcactcaagagctgg
gcggtgcccaaagggccgtcactggaccccagcgtgcgtcgcctggccgtacacgttgaa
gatcatccgctggattacgccgacttcgaagggcacattcccgagggtcattacggcgcc
ggcgatgtgatcgtttgggatcggggcgtgtggcagcctgaaggtgatccgcaggcggcc
tatgccaagggcaagctgcgctttcgcctgcaaggggagaagctcggtggaacgtggaat
ctttttcgcacgcgcctggaaggcaagaaagaacagtggatgctggtcaagtccgaggac
gatcacgcccgtagcgaggacgactacagcatcgtcgaggaccaacccgacagcgtcgtc
agcgatcgcaccctggcgccgcgcacgcgcaataccgcaaagtccacacccgcccgggcg
aaaaaagccagcctgccccggatactgcaaccacaactggccacgctggtggacgccccg
cctgcgggcgactggcgctatgaagtgaaattcgacggctaccgcattctggcgcgaatc
gacggccaggatgtgcgcctgttcacccgcaacggccatgactggagcgcgcgcatgccg
cggctggtggacgccctgcgtgcgctgtccgtggacagcgcctggctcgacggtgaggtg
gtggtcaacggcgatgacgacgtcgcggatttccaggcgctgcaaaacgccttcgaccgc
gatgacgaccacgccattcgttattacctgttcgacctgcccttcctgggcggcaaggac
ttgcgcccggtgccgctgtcgcagcgccgagacgcgctgcaacagctcctggcgaacgat
gcatccgatgtgctgcattactccggcgacttcgatcaaccgctcgactcgctgctcgac
agcgcctgtcgtctggggctcgaaggcctgatcggcaaacgtgccgacagcccctacagc
ggccagcgcagccgcgactggatcaagctcaaatgcacgcggcgccaggagttcgtcatc
gtcggctacaccgaccccaagggcagtcgcacggccttcggtgccctgctgctggccctg
cacgacgccgacagcggcgagttgcgctacgccggtcgagtgggcaccgggttcagcgcc
gccaccctgaaaaccatccatgcccagctcaagcccttgcacagcgccaagcctgcactg
gcgaagccgcccagcggtgcccaggcccacggcgtgcactggctcaagccacggttgctg
gccgaggtcgcctacgcccagatgactcgcgacggtatcgtgcgccacgcggtgttccac
gggctgcgcgacgacaagccagccactgccatcgacctggaacaacccatgcccaagccc
gctgcaaagcgccgcaaggccgagcccgaagccctcggcgatctgcacctgactcacccg
gaccgcgtcatcgatgcaaccaccggcgtgaccaagcgtcaggttctggagtactacgcc
caggtgtccgaatggctgctgccacaactcaaggatcgccccgtagccttggtgcgcgca
cctgaagggctgagcggggagctgttcttccagaaacatgccgggcaactgcacctgcct
cacgtgcgcacgttcgacaaagcccaggctggtcaggctgccatggtgctgaaccgggtc
gacagcgtgctgggcgccgtgcagatgaacaccttggaatttcatacctggaacgccacg
acccgggacttcgacaagcccgaccgcctggtgctcgacctggacccggatccggcgttg
ccctggaaagcgatggtcgaagccacccaactgaccctcaccttgctcgaggaactgggc
ctgaaggtgttcctcaagaccagcggtggcaaaggcatgcacctggtggtgccgctcacc
cgacgcgcatcctgggagcaggtaaaggcgttcagtcatgccctggtgcaacacatggcg
gacctgttccccgagcgcttttcggccgtgtccggcccgaagaatcgggtgggtcggatc
ttcatcgactacctgcgcaatgcccagggcgcgaccaccgtcagcgcctattccttgcgc
gcgcgcgatggactggcggtgtcggtgccgatctggcccgaggaactggcgcagctcaaa
ggcgctgaccagtggaccctcgtcaacctgcacgaacgcctggccgacctcgacgaccct
tgggcgcagatgagcatgacccgccaatcgatcaccgcgcgcatgcgcaagcaactggga
atggacgccaccgcatga

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