Pseudomonas parafulva: NJ69_06730
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Entry
NJ69_06730 CDS
T03520
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppv
Pseudomonas parafulva
Pathway
ppv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NJ69_06730 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppv03400
]
NJ69_06730 (ligD)
Enzymes [BR:
ppv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NJ69_06730 (ligD)
DNA repair and recombination proteins [BR:
ppv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NJ69_06730 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIZ32713
UniProt:
A0A0A7JJE5
LinkDB
All DBs
Position
complement(1528505..1530982)
Genome browser
AA seq
825 aa
AA seq
DB search
MAKPLQEYQRKRDFKATPEPSGKGRRQAADHALHFCIQKHDASHLHYDFRLELDGALKSW
AVPKGPSLDPSVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGVWQPEGDPQAA
YAKGKLRFRLQGEKLGGTWNLFRTRLEGKKEQWMLVKSEDDHARSEDDYSIVEDQPDSVV
SDRTLAPRTRNTAKSTPARAKKASLPRILQPQLATLVDAPPAGDWRYEVKFDGYRILARI
DGQDVRLFTRNGHDWSARMPRLVDALRALSVDSAWLDGEVVVNGDDDVADFQALQNAFDR
DDDHAIRYYLFDLPFLGGKDLRPVPLSQRRDALQQLLANDASDVLHYSGDFDQPLDSLLD
SACRLGLEGLIGKRADSPYSGQRSRDWIKLKCTRRQEFVIVGYTDPKGSRTAFGALLLAL
HDADSGELRYAGRVGTGFSAATLKTIHAQLKPLHSAKPALAKPPSGAQAHGVHWLKPRLL
AEVAYAQMTRDGIVRHAVFHGLRDDKPATAIDLEQPMPKPAAKRRKAEPEALGDLHLTHP
DRVIDATTGVTKRQVLEYYAQVSEWLLPQLKDRPVALVRAPEGLSGELFFQKHAGQLHLP
HVRTFDKAQAGQAAMVLNRVDSVLGAVQMNTLEFHTWNATTRDFDKPDRLVLDLDPDPAL
PWKAMVEATQLTLTLLEELGLKVFLKTSGGKGMHLVVPLTRRASWEQVKAFSHALVQHMA
DLFPERFSAVSGPKNRVGRIFIDYLRNAQGATTVSAYSLRARDGLAVSVPIWPEELAQLK
GADQWTLVNLHERLADLDDPWAQMSMTRQSITARMRKQLGMDATA
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccgctgcaggaataccagcgcaagcgcgatttcaaggccacgcccgagccc
tctggcaagggccgtcgccaagccgcagaccatgcgctgcatttctgcatccagaagcac
gacgccagccacctgcattacgacttccgcctggagctggacggtgcactcaagagctgg
gcggtgcccaaagggccgtcactggaccccagcgtgcgtcgcctggccgtacacgttgaa
gatcatccgctggattacgccgacttcgaagggcacattcccgagggtcattacggcgcc
ggcgatgtgatcgtttgggatcggggcgtgtggcagcctgaaggtgatccgcaggcggcc
tatgccaagggcaagctgcgctttcgcctgcaaggggagaagctcggtggaacgtggaat
ctttttcgcacgcgcctggaaggcaagaaagaacagtggatgctggtcaagtccgaggac
gatcacgcccgtagcgaggacgactacagcatcgtcgaggaccaacccgacagcgtcgtc
agcgatcgcaccctggcgccgcgcacgcgcaataccgcaaagtccacacccgcccgggcg
aaaaaagccagcctgccccggatactgcaaccacaactggccacgctggtggacgccccg
cctgcgggcgactggcgctatgaagtgaaattcgacggctaccgcattctggcgcgaatc
gacggccaggatgtgcgcctgttcacccgcaacggccatgactggagcgcgcgcatgccg
cggctggtggacgccctgcgtgcgctgtccgtggacagcgcctggctcgacggtgaggtg
gtggtcaacggcgatgacgacgtcgcggatttccaggcgctgcaaaacgccttcgaccgc
gatgacgaccacgccattcgttattacctgttcgacctgcccttcctgggcggcaaggac
ttgcgcccggtgccgctgtcgcagcgccgagacgcgctgcaacagctcctggcgaacgat
gcatccgatgtgctgcattactccggcgacttcgatcaaccgctcgactcgctgctcgac
agcgcctgtcgtctggggctcgaaggcctgatcggcaaacgtgccgacagcccctacagc
ggccagcgcagccgcgactggatcaagctcaaatgcacgcggcgccaggagttcgtcatc
gtcggctacaccgaccccaagggcagtcgcacggccttcggtgccctgctgctggccctg
cacgacgccgacagcggcgagttgcgctacgccggtcgagtgggcaccgggttcagcgcc
gccaccctgaaaaccatccatgcccagctcaagcccttgcacagcgccaagcctgcactg
gcgaagccgcccagcggtgcccaggcccacggcgtgcactggctcaagccacggttgctg
gccgaggtcgcctacgcccagatgactcgcgacggtatcgtgcgccacgcggtgttccac
gggctgcgcgacgacaagccagccactgccatcgacctggaacaacccatgcccaagccc
gctgcaaagcgccgcaaggccgagcccgaagccctcggcgatctgcacctgactcacccg
gaccgcgtcatcgatgcaaccaccggcgtgaccaagcgtcaggttctggagtactacgcc
caggtgtccgaatggctgctgccacaactcaaggatcgccccgtagccttggtgcgcgca
cctgaagggctgagcggggagctgttcttccagaaacatgccgggcaactgcacctgcct
cacgtgcgcacgttcgacaaagcccaggctggtcaggctgccatggtgctgaaccgggtc
gacagcgtgctgggcgccgtgcagatgaacaccttggaatttcatacctggaacgccacg
acccgggacttcgacaagcccgaccgcctggtgctcgacctggacccggatccggcgttg
ccctggaaagcgatggtcgaagccacccaactgaccctcaccttgctcgaggaactgggc
ctgaaggtgttcctcaagaccagcggtggcaaaggcatgcacctggtggtgccgctcacc
cgacgcgcatcctgggagcaggtaaaggcgttcagtcatgccctggtgcaacacatggcg
gacctgttccccgagcgcttttcggccgtgtccggcccgaagaatcgggtgggtcggatc
ttcatcgactacctgcgcaatgcccagggcgcgaccaccgtcagcgcctattccttgcgc
gcgcgcgatggactggcggtgtcggtgccgatctggcccgaggaactggcgcagctcaaa
ggcgctgaccagtggaccctcgtcaacctgcacgaacgcctggccgacctcgacgaccct
tgggcgcagatgagcatgacccgccaatcgatcaccgcgcgcatgcgcaagcaactggga
atggacgccaccgcatga
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