KEGG   Pseudomonas parafulva: NJ69_06730Help
Entry
NJ69_06730        CDS       T03520                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppv  Pseudomonas parafulva
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppv00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    NJ69_06730 (ligD)
Enzymes [BR:ppv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NJ69_06730 (ligD)
DNA repair and recombination proteins [BR:ppv03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NJ69_06730 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(1528505..1530982)
Genome map
AA seq 825 aa AA seqDB search
MAKPLQEYQRKRDFKATPEPSGKGRRQAADHALHFCIQKHDASHLHYDFRLELDGALKSW
AVPKGPSLDPSVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGVWQPEGDPQAA
YAKGKLRFRLQGEKLGGTWNLFRTRLEGKKEQWMLVKSEDDHARSEDDYSIVEDQPDSVV
SDRTLAPRTRNTAKSTPARAKKASLPRILQPQLATLVDAPPAGDWRYEVKFDGYRILARI
DGQDVRLFTRNGHDWSARMPRLVDALRALSVDSAWLDGEVVVNGDDDVADFQALQNAFDR
DDDHAIRYYLFDLPFLGGKDLRPVPLSQRRDALQQLLANDASDVLHYSGDFDQPLDSLLD
SACRLGLEGLIGKRADSPYSGQRSRDWIKLKCTRRQEFVIVGYTDPKGSRTAFGALLLAL
HDADSGELRYAGRVGTGFSAATLKTIHAQLKPLHSAKPALAKPPSGAQAHGVHWLKPRLL
AEVAYAQMTRDGIVRHAVFHGLRDDKPATAIDLEQPMPKPAAKRRKAEPEALGDLHLTHP
DRVIDATTGVTKRQVLEYYAQVSEWLLPQLKDRPVALVRAPEGLSGELFFQKHAGQLHLP
HVRTFDKAQAGQAAMVLNRVDSVLGAVQMNTLEFHTWNATTRDFDKPDRLVLDLDPDPAL
PWKAMVEATQLTLTLLEELGLKVFLKTSGGKGMHLVVPLTRRASWEQVKAFSHALVQHMA
DLFPERFSAVSGPKNRVGRIFIDYLRNAQGATTVSAYSLRARDGLAVSVPIWPEELAQLK
GADQWTLVNLHERLADLDDPWAQMSMTRQSITARMRKQLGMDATA
NT seq 2478 nt NT seq  +upstreamnt  +downstreamnt
atggccaagccgctgcaggaataccagcgcaagcgcgatttcaaggccacgcccgagccc
tctggcaagggccgtcgccaagccgcagaccatgcgctgcatttctgcatccagaagcac
gacgccagccacctgcattacgacttccgcctggagctggacggtgcactcaagagctgg
gcggtgcccaaagggccgtcactggaccccagcgtgcgtcgcctggccgtacacgttgaa
gatcatccgctggattacgccgacttcgaagggcacattcccgagggtcattacggcgcc
ggcgatgtgatcgtttgggatcggggcgtgtggcagcctgaaggtgatccgcaggcggcc
tatgccaagggcaagctgcgctttcgcctgcaaggggagaagctcggtggaacgtggaat
ctttttcgcacgcgcctggaaggcaagaaagaacagtggatgctggtcaagtccgaggac
gatcacgcccgtagcgaggacgactacagcatcgtcgaggaccaacccgacagcgtcgtc
agcgatcgcaccctggcgccgcgcacgcgcaataccgcaaagtccacacccgcccgggcg
aaaaaagccagcctgccccggatactgcaaccacaactggccacgctggtggacgccccg
cctgcgggcgactggcgctatgaagtgaaattcgacggctaccgcattctggcgcgaatc
gacggccaggatgtgcgcctgttcacccgcaacggccatgactggagcgcgcgcatgccg
cggctggtggacgccctgcgtgcgctgtccgtggacagcgcctggctcgacggtgaggtg
gtggtcaacggcgatgacgacgtcgcggatttccaggcgctgcaaaacgccttcgaccgc
gatgacgaccacgccattcgttattacctgttcgacctgcccttcctgggcggcaaggac
ttgcgcccggtgccgctgtcgcagcgccgagacgcgctgcaacagctcctggcgaacgat
gcatccgatgtgctgcattactccggcgacttcgatcaaccgctcgactcgctgctcgac
agcgcctgtcgtctggggctcgaaggcctgatcggcaaacgtgccgacagcccctacagc
ggccagcgcagccgcgactggatcaagctcaaatgcacgcggcgccaggagttcgtcatc
gtcggctacaccgaccccaagggcagtcgcacggccttcggtgccctgctgctggccctg
cacgacgccgacagcggcgagttgcgctacgccggtcgagtgggcaccgggttcagcgcc
gccaccctgaaaaccatccatgcccagctcaagcccttgcacagcgccaagcctgcactg
gcgaagccgcccagcggtgcccaggcccacggcgtgcactggctcaagccacggttgctg
gccgaggtcgcctacgcccagatgactcgcgacggtatcgtgcgccacgcggtgttccac
gggctgcgcgacgacaagccagccactgccatcgacctggaacaacccatgcccaagccc
gctgcaaagcgccgcaaggccgagcccgaagccctcggcgatctgcacctgactcacccg
gaccgcgtcatcgatgcaaccaccggcgtgaccaagcgtcaggttctggagtactacgcc
caggtgtccgaatggctgctgccacaactcaaggatcgccccgtagccttggtgcgcgca
cctgaagggctgagcggggagctgttcttccagaaacatgccgggcaactgcacctgcct
cacgtgcgcacgttcgacaaagcccaggctggtcaggctgccatggtgctgaaccgggtc
gacagcgtgctgggcgccgtgcagatgaacaccttggaatttcatacctggaacgccacg
acccgggacttcgacaagcccgaccgcctggtgctcgacctggacccggatccggcgttg
ccctggaaagcgatggtcgaagccacccaactgaccctcaccttgctcgaggaactgggc
ctgaaggtgttcctcaagaccagcggtggcaaaggcatgcacctggtggtgccgctcacc
cgacgcgcatcctgggagcaggtaaaggcgttcagtcatgccctggtgcaacacatggcg
gacctgttccccgagcgcttttcggccgtgtccggcccgaagaatcgggtgggtcggatc
ttcatcgactacctgcgcaatgcccagggcgcgaccaccgtcagcgcctattccttgcgc
gcgcgcgatggactggcggtgtcggtgccgatctggcccgaggaactggcgcagctcaaa
ggcgctgaccagtggaccctcgtcaacctgcacgaacgcctggccgacctcgacgaccct
tgggcgcagatgagcatgacccgccaatcgatcaccgcgcgcatgcgcaagcaactggga
atggacgccaccgcatga

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