Paenibacillus polymyxa E681: PPE_00335
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Entry
PPE_00335 CDS
T01319
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PPE_00335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppy03400
]
PPE_00335
Enzymes [BR:
ppy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PPE_00335
DNA repair and recombination proteins [BR:
ppy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PPE_00335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
TMEM101
Motif
Other DBs
NCBI-ProteinID:
ADM68217
UniProt:
E0RC42
LinkDB
All DBs
Position
complement(383103..384065)
Genome browser
AA seq
320 aa
AA seq
DB search
MRTELKPVIPFEPELSEKVPVDPGLWRYEIKWDGTRIMTYHNQGSTRLFNRKQHERTLLY
PELALFPSYCKADSVILDGEMIALGADGKPSFHEIMRRDLIRRTDRIQSAYEAVPATYML
FDIVYLNGEWVHLKPLQERLELLHQIIIPNERIQLAPAHPDGQALFQVMCSQGMEGIVCK
KLDSPYTLGGKDERWVKVKNYGDIIAVIGGYTLNGGIINAVLLGQYDKQGMLRYIGHVGT
GKLTREDWRQLTERLLPHTISERPFSNKPDRHQDAFWVQPMYTAKVQYSEWRWQEGRTLR
QPSIQAFVNQGLDQCIGPWI
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtacggaattaaaacctgtcatcccgtttgaaccggaactgagcgaaaaagtacct
gtagatccgggcctttggcgttatgaaataaaatgggacggtacgagaattatgacgtat
cacaaccagggcagcacacgcctgtttaaccgcaagcagcatgaacgaacgcttttatac
ccggagcttgctctcttcccctcctactgtaaggcagattcggtcatattggacggggaa
atgatcgcactcggtgccgacggtaagccatcgttccatgaaattatgagacgggatctg
attcgtcggacggatcgaattcagtcagcctatgaagctgtacccgctacttacatgttg
tttgatattgtttatctgaacggggagtgggttcatcttaaaccgttacaggaaaggctc
gaactgctgcatcagatcatcataccgaatgaacggattcaactggcccccgctcatcct
gatggacaagctctatttcaggtcatgtgcagccaaggaatggaaggcattgtttgtaaa
aagctggatagtccgtacacattgggcggaaaagatgaacgatgggtcaaggtcaaaaat
tatggcgatatcattgccgttatcggtggctataccctaaacggaggcatcatcaacgct
gtgttgctgggccaatatgataaacaaggaatgctgcgctatatcgggcatgtgggtacg
ggtaagctgactcgggaagattggcgtcagcttaccgagcgcctgctgccacataccata
tcggagcgaccctttagcaataaaccggatcgacatcaagatgcattttgggtgcaaccc
atgtataccgccaaggtccaatatagtgagtggcgatggcaagaaggacgtactctgcgt
caaccctccatacaagcctttgtgaatcagggcctcgatcagtgtatcggtccctggata
tga
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