Paenibacillus polymyxa E681: PPE_01161
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Entry
PPE_01161 CDS
T01319
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PPE_01161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppy03400
]
PPE_01161
Enzymes [BR:
ppy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PPE_01161
DNA repair and recombination proteins [BR:
ppy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PPE_01161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ADM69009
UniProt:
E0RM81
LinkDB
All DBs
Position
complement(1261505..1262407)
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AA seq
300 aa
AA seq
DB search
MGQAVKGTITIEGQEIPITNPDKPLWPEAGVTKALYLRKLAVLAPFLLKYCHHRLLTVIR
WPHGIHGDFFYQKNAPRPRPDYIETALHDGIEYIVLGKLPQLLWLGNQAALEFHPSLHEA
GSKLPCEWMIDLDPSREVEPRIMEAASIVGEVLASLGLDSVPKTSGATGVQIIVPIRTGI
TFDELRSIGLLVGQFVTEKHPHLFTLERLKKDRGTAIYFDYLQHYQGKTLAAPYTPRARP
GATVSTPLTWEEVRQDVSPLDYHLLNIEERLNQVGDLIDKVPPQPVEDVLKHMRTKAHRT
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagccgttaaaggtactattaccattgaaggtcaggaaattcctatcacaaac
ccggataaaccactgtggcctgaagcaggcgtgactaaggcgctatatcttcgcaagctg
gcggtattagctcccttcctgctcaaatattgccatcatcgtctgctgaccgtcattcgc
tggccacatgggattcacggcgactttttttatcagaaaaatgccccacgtcctcggccg
gactatattgaaaccgctctgcatgatggtattgaatatatcgtgctcggcaaattgcca
caacttctctggcttggtaatcaagctgcgttggaattccacccctctctgcatgaagcg
ggaagcaagctgccctgtgaatggatgattgaccttgatccatccagagaggtggagcca
cgtattatggaggcagcctctattgtcggtgaagtactggcttcgcttggtttggattcc
gtccccaaaacatccggggccacaggtgtacaaattatcgttccgatccgtacaggcata
accttcgacgaacttcgcagcatcgggctattagtcggacagtttgtgacagaaaagcac
ccgcatctgttcacactcgaacggttaaagaaggatcggggaacagccatctattttgat
tatttgcagcattatcaggggaaaactctggccgcaccttataccccgcgggcacgccct
ggcgctacggtctccactccactaacatgggaagaggtacggcaagatgtatcaccactt
gactatcatttgctgaatattgaggaacgactaaaccaggtaggcgacttgatcgacaag
gttcctccccagcccgtagaagacgtcctcaagcatatgcgcaccaaggcacaccgaacc
tga
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