Podarcis raffonei (Aeolian wall lizard): 128401026
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Entry
128401026 CDS
T09310
Symbol
USP40
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40 isoform X1
KO
K11869
ubiquitin carboxyl-terminal hydrolase 40 [EC:
3.4.19.12
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
praf01002
]
128401026 (USP40)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
praf04121
]
128401026 (USP40)
Enzymes [BR:
praf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
128401026 (USP40)
Peptidases and inhibitors [BR:
praf01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
128401026 (USP40)
Ubiquitin system [BR:
praf04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
128401026 (USP40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
128401026
NCBI-ProteinID:
XP_053219832
LinkDB
All DBs
Position
1:134943302..134993173
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AA seq
1238 aa
AA seq
DB search
MFGNLFDEDFSFLSNNQCGKQKSKHKDAELLVPRESTNLSGIKNQGGTCYLNSLLQTLLF
TPEFREALFSIGPEELGSLEDNSKPESKVRIIPLQLQRLFAQLLLLDQHAASTTDLTDSF
GWNSNEEMRQHDVQELNRILFSALETSLVGTSGHNLINQLYHGTVVNHIVCKECKNVSER
QEDFLDLTVAVKDVSGLEEALWNMYVEEEHFEKDNLYRCGACNKLVEATKSAKLRKLPPF
LTISLLRFNFNFEKCERYKEISSYAFPIRINLKPFCEQTEVDDFKYMYELFSVIIHKGGC
YGGHYHVYIRDIDELGNWQVLEESNMNDEDKDLKDIENAKEKENPLRILRNILLEEESKE
IAVDRLAQKLLEKKSVSWNKKYRKQHGPIRKFLQSHYPTFLLSSDESKVKLNDHHKLHFG
SASQSNPLNHEVKMSSEKATTGLREYSSESHWFDLNDSKVQPIREQEIEKQFQGNESAYM
LFYRQSQMTRPSEARGNPRYRVPIHLLNEMDAANIKLQKKRAEYDLANNNIDLHLHICSH
YKFYNGALHPVVSQKESVLDLTIDKRKTLGELQQLVFQLLEFWEGDLVLSLAKPLPAGLH
IYQTLEGDDSTLSGIGLSDGANIFVWNGKEVDGVEVLTGIDHEPVLINVLRLAGHNEGRV
GQQFMESQHVFPCSSNLRAICDALMSPEGIVLKNHSGSEKDSENWKVIPEEDMKQTLRNI
GLKNGSSVLVLDSHDQSMVNVAGGNLTAFTHDISWLQVKNFCRLEAEEIQVKITATIETV
MADIRIKAIEEMQLDKELVNNSCLRPISRNGKLLCPVPEDYTVKEAELKMGSLLGLCSGK
APTATELFLYYIVGHELQSSPEMEMVVQETTTVRECLNLMLKKSGLAGDNWHLRKIDWCY
EAGDALSEEAATLKELNICSGDILNVAEGKLPPKGFLKVSVWWYKAFSQSRHKRNRQEQG
NSVCKKVEALELSASGDTPTFLQSEVDLCYVGDIEISGDAFLEDLKMQVMTLPFSEEFSI
PLPEFLRVWTMENKCPCRLLRNNKQQLHKFKLGNRVEICIEPLHKEENLGPKDLLLRVQM
GIPGERDYYHPVDLVWDISKECTACALRQRIASYYSLPAEQIEIAKYSPEKFEWIPICSW
TQQVSKRKKKKKGDSLQLSPYNLKDGDIIGVKNLLLDDSKDFGTMKDDIGKQMQKQLAME
KTSSQKPDCLQNDHYSEKKMAKNHKPEAALSISVGVFS
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgtttggaaatttatttgatgaagacttctcctttttgtcaaacaatcaatgtgggaag
caaaaatcaaaacacaaagatgctgagctgcttgttcctagagaaagcaccaatttaagt
ggaataaaaaatcagggtggaacctgttaccttaattcacttcttcagactctactattc
acaccagaatttagagaagcactgttttctataggccctgaagaacttggttctttggaa
gacaacagtaagcctgaatcaaaggttcgaataatcccattacagctccaacggttgttt
gcccaacttctgctcctagatcaacatgctgcatctacaacagacctcactgacagcttt
ggatggaatagtaatgaggaaatgagacaacatgatgtgcaggagttaaatcggattcta
ttcagtgctttagaaacctcccttgttgggacctctggtcataatctaataaaccagcta
taccatgggactgttgttaatcacattgtctgtaaagagtgcaagaatgtcagtgagaga
caggaggatttcttggacctaacagttgctgtcaaagatgtatctggcttggaggaagcc
ttgtggaatatgtacgtggaagaagaacattttgagaaagataacttgtatcgatgtgga
gcatgcaataaattagttgaagccacaaagtctgctaaactacgcaagctgcctccgttt
ctcacaatctccctcttgagatttaacttcaatttcgagaagtgtgaacgatacaaggaa
ataagcagctatgcatttccaatccggataaacctcaagcctttttgtgagcagactgaa
gtggatgatttcaaatacatgtatgagctcttttctgttataatacacaaaggtggctgt
tatggaggacattatcatgtttacatcagagatattgatgaactaggaaactggcaggtg
ctagaggaaagcaacatgaatgatgaagataaggatttgaaagatattgaaaatgcaaaa
gagaaggaaaatccattacgaattttaagaaacatcttattggaggaagagtctaaggaa
attgctgtggatcggttggcacagaaacttttggagaaaaaaagtgtgtcctggaacaag
aaataccgtaaacagcatggaccaatacggaagtttttgcagagtcattatccaacattt
cttctaagttctgatgaaagcaaagttaagctgaatgatcatcataaactccattttgga
tcagcatcccaaagcaaccctctgaaccatgaggtaaagatgtcatcagaaaaagcaaca
acaggtttacgggaatattcatccgaatcccattggtttgatttgaatgactccaaagtc
cagccaatcagagagcaagagattgagaaacagtttcaggggaatgagagtgcctacatg
ttgttctatcgacaatcccaaatgacaagaccatctgaagctcgaggaaatccaagatac
cgggtccccatccatctcttgaatgaaatggatgccgctaatatcaaactgcagaagaag
agggcagaatatgacttggcaaacaacaatattgatttacatctccatatatgttctcac
tataaattttacaatggagctctgcacccagtagtttctcagaaggaaagtgttctagat
cttactattgataagagaaaaacactgggagaacttcagcaattggtatttcagttgctg
gaattttgggaaggagacctagttctcagccttgcaaagcctcttccagctgggctgcat
atataccaaacacttgaaggggatgattctacgttgagtggcattggactttctgatgga
gccaatatattcgtgtggaatggaaaagaggttgatggagtggaagttctgactggcatt
gaccatgaacctgttcttataaacgttctgcgtttagctggacataatgaaggacgagtg
ggacagcaatttatggaatcccagcatgtatttccatgtagttcaaacctgagagctatt
tgtgatgctttaatgtcccccgaagggattgtcttaaagaaccattcagggtctgagaaa
gactctgaaaactggaaagtcattcctgaagaagatatgaaacaaacgctcagaaatatt
gggctcaagaatggaagctcagtcctagttttagacagccatgaccaaagcatggtgaat
gtggcaggcggcaatttgactgcttttacgcatgatatcagctggttacaagtaaaaaat
ttctgtagattggaggctgaagagatacaagttaaaattactgcaactattgaaacagtg
atggcagacatcaggattaaagcaatagaagaaatgcagttggacaaggagctagttaac
aatagctgtctcaggcccattagcagaaatggaaaacttctttgtccagtgcctgaggat
tatactgttaaagaagcagagctgaaaatgggaagccttctaggactgtgctctgggaaa
gctccaacagccactgagctttttctgtattatattgtgggccatgagcttcagtctagt
ccagagatggagatggtggtgcaggagactacaactgtaagagagtgtttaaatttaatg
ctgaagaagtctggcttagctggggacaactggcacttgagaaagattgactggtgctat
gaagctggggatgcgttaagtgaggaagctgccacactaaaagaactaaatatctgcagc
ggggatatactgaatgttgctgaggggaagcttccgccaaaggggttcctgaaagtgtct
gtctggtggtacaaagccttctctcagtcaaggcacaaaaggaacaggcaagaacaagga
aactctgtctgcaaaaaagtggaagctctggaactgtccgcatctggagatacaccaaca
tttctacaaagtgaagttgacctatgttatgtgggtgatatagagatctcaggagacgct
ttcctggaagacctaaagatgcaggtgatgactttgccattctctgaagagtttagtatt
ccactacctgagtttctccgagtttggacaatggaaaataagtgcccttgcaggctttta
cgaaacaataagcagcaactccataaattcaaactaggaaacagagtggaaatttgtata
gagcctttacacaaggaagagaatcttggaccaaaggatttgcttctgcgagtgcagatg
ggcataccaggggaaagagattattaccatcctgtggatttggtatgggatatctccaaa
gagtgtacagcatgtgcattgagacaaagaattgcttcatactactcattaccagcggag
caaattgaaattgctaaatattctcctgagaagtttgaatggataccaatatgtagttgg
acacagcaagtttcaaagcgaaaaaagaagaagaaaggtgacagtttacaattaagcccc
tacaacttgaaggatggagatattattggtgtgaagaatctcctacttgatgacagtaaa
gacttcggtaccatgaaagatgacattggaaaacaaatgcagaagcaacttgctatggaa
aaaacaagtagccagaagcctgactgtctgcagaatgatcattactctgaaaaaaagatg
gctaagaatcataaacctgaagcagcactctccatcagtgtaggggttttcagctga
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