Poecilia reticulata (guppy): 103462493
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Entry
103462493 CDS
T05149
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103462493 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pret03041
]
103462493 (dhx38)
Enzymes [BR:
pret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103462493 (dhx38)
Spliceosome [BR:
pret03041
]
Complex C
Other components
Step II factors
103462493 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
Flavi_DEAD
AAA_30
PhoH
Microtub_bd
Motif
Other DBs
NCBI-GeneID:
103462493
NCBI-ProteinID:
XP_008403553
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All DBs
Position
LG3:18703493..18723595
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AA seq
1269 aa
AA seq
DB search
MNKKQTLHISAGLYQREIREIMDDDDVSMHRLEGTQSGAQVGGLIVKKKSAASEPHVFRA
PTPRTSLLGLDLLAAQKRKEREIKEQEESNGNERNRKKSKVSSYKDWEESKSDSGSDEED
DDTSSATKKERKYRVTGSETPSNPGGVSEEFRRRHEQREKDRREQGVFASSKEDKTRERS
KDKGRERRSERDDRDGRHSRGNSSSRSERGERSERSQRDGWSERISRGSKRDEPATPQNR
PRDGSTPSRSNWDEDDSGYGSSRHSQWESPSPAPSHRESDRSERSHRSGRESERRDRSVR
GRYTDDTPLPTPSYKYNEWANDRKHLGSTPRLSQGKGKKGEGGIDFDNEDEKEQWEEDQK
QADRDWYMMDEGYDEFHNPFTSTSEEYVKKREQILQKQTQKRISAQKRQINEDNERWETN
RMLTSGVVQRLEVDEDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPIVPVKDPTSDM
AIISRKGSQLVRKHREQKERKKAQHKHWELAGTKLGDIMGIKKKEDEEPGGKVVGEDGKV
DYRADQKFAEHMKEKSEASSDFAKKKSILEQRQYLPIFAVRQQLLNIIRDNSIVIVVGET
GSGKTTQLTQYLHEDGYTRYGMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFED
CTSEKTMIKYMTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRTD
LKLIVTSATMDSDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLS
GMVGDILIFMPGQEDIEVTSDQIVERLEDLENAPPLAVLPIYSQLPSDLQAKIFQKAPDG
VRKCIVATNIAETSLTVDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQRSGRA
GRTGPGQCYRLYTQSAYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPE
DNMLNSMYQLWILGALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSM
LSVPAIFYRPKGREEESDQVREKFSVPESDHLTYLNVYMQWKNNNYSSIWCNDHFIHTKA
MRKVREVRSQLKDIMVQQKMNLMSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGM
PCHLHPTSSLFGMGYTPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKS
RQENRRRAKEELSNMEQEMVLAQEQLRARREEQEKKSNTCSVRAVKICTPGRKEEAPMTP
RRTPARFGL
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagcaaactttacacatcagcgcaggactttatcaaagagagattcgggaa
attatggatgacgatgatgtgtccatgcataggctggaagggactcagtcaggtgctcaa
gttggaggtctgatagttaagaagaagagcgctgcttcggagccacatgtttttcgggca
cctacaccacgcacctctttgctgggcttggacctgctggctgcgcagaaaaggaaggag
cgggagattaaagagcaagaagagtctaatggcaatgaaagaaacaggaagaagtcaaag
gtttcctcctacaaagactgggaggaaagtaaaagtgactctgggtctgatgaggaggat
gatgacacaagtagtgcgacaaagaaggagaggaagtaccgtgttacaggctctgagact
ccctccaatcctggaggcgtcagcgaagagttcagacgccggcatgagcagcgggagaaa
gacaggcgtgagcagggagtctttgcctcctccaaggaggacaagaccagagaaaggagc
aaagataaaggaagggagcgacggagtgaaagagatgatcgagacggtagacacagtcgg
ggcaacagcagcagccggtcggaacgcggtgagaggagcgagcgctcacagcgagacggc
tggtccgaacgcatcagcagagggagtaagagagacgaacccgcgacaccgcagaatcgc
ccccgagatggctccacaccttcccgatctaactgggatgaggacgatagcggttatggc
agctcacggcattcccagtgggagtctccatctcctgccccgtctcacagagagtccgat
cgctctgaaagaagccaccgttctgggcgagagagtgagaggagggacagatcagtcaga
ggccgttacactgatgacacacccctgcccaccccgtcctacaagtacaacgagtgggcc
aatgataggaagcatttaggctccacacctcgtttgtcacaagggaaaggcaaaaaaggt
gagggaggaatagattttgataacgaggacgagaaagaacagtgggaggaggaccaaaag
caagctgaccgagactggtacatgatggacgagggctatgatgagtttcacaaccctttc
acctccacctctgaagaatatgtgaaaaagagagagcagatcctccagaaacagactcag
aaaagaatatctgcgcagaagcgacagatcaacgaggataacgaacgctgggagacgaac
cgtatgttgaccagtggtgttgtgcaaaggctggaggtggatgaagactttgaggaagac
aacgctgctaaagttcacctgctggttcacaatctggttcctcctttcctggatggaaga
atagttttcactaagcagccagagcccatcgtccctgtgaaagatcccacctctgacatg
gccatcatctctcgaaagggaagccagcttgtccgtaaacatcgtgagcaaaaggagcgc
aaaaaggcacagcacaaacactgggaattggcaggcaccaagttaggcgatataatgggc
atcaagaagaaagaggatgaagagcctggaggcaaagtggtgggagaggatggtaaagta
gactacagggctgatcagaaatttgctgagcacatgaaggagaagagtgaagccagcagt
gactttgctaagaagaagagcattctggagcagaggcagtacctgcctatctttgccgtc
aggcagcaacttctcaacatcataagggacaacagcatcgtcattgttgtcggggaaacg
ggtagcggtaagaccacccagctgactcagtacctgcatgaagacggctacactcgctac
gggatggtgggttgcactcagccccgacgagtggccgccatgagtgtggccaagagagtc
agcgaggagatcggcaccaaccttggagaggaggtcggatacgcaatccgctttgaggac
tgcacttcggagaaaacgatgataaagtacatgactgacgggattctgctcagggagtct
ctgcgggagtcggacctggaccactacagtgcagttattatggacgaggctcacgaacgc
tccctcaatacagatgtgctgtttggcctgctgcgggaggttgtatctcgacgaaccgac
ttgaagctcatcgtgacctctgctactatggactcagacaaatttgcagcgttttttggc
aatgtgcctattttccatattccagggagaacatttccagttgacatattgttcagcaag
accccacaggaggactatgtcgaggctgcagtgaagcaggctctgcagatccacctcagt
gggatggtgggagacatcttgatctttatgcctggacaggaagatatcgaggtgacatcg
gatcagatcgtggaacgcctggaagacttggagaacgctccccctctggctgtgctgccc
atttactcacaacttccttctgatctgcaagcgaagatcttccagaaggctccagatggt
gttagaaaatgcattgttgccacaaacatcgcagagacgtcgctcactgtggatgggatc
atgttcgttgtggattcaggctattgcaaacttaaggttttcaaccctcggatcggtatg
gacgctctccaggtttaccccatcagtcaggctaatgccaaccagcgctccggccgagcc
ggacgtaccggacccggacagtgttacaggctttacactcagagcgcctataagaatgag
atgctgaccaccaccatcccagagatccagagaaccaacctggccaatgtggtgctgctg
ctgaagtctctgggggtccaggacctgctcctgttccacttcatggacccaccgcctgag
gacaacatgctcaactccatgtaccagctctggatcctgggagctctggacaacacaggt
gctctgaccccaaccgggcgtctgatggtggagtttccactcgaccccgccctctcaaag
atgctcattgtgtcctgtgacatgggctgcagtgcagacatcctcatcatcgtctccatg
ttgtctgtgccagccatcttttacagacctaagggtcgcgaggaggaaagcgaccaggtg
agggagaagttctcagtccccgagagcgaccacctcacatacctgaacgtctacatgcag
tggaagaacaacaattattccagcatctggtgcaatgatcacttcatccacaccaaggcc
atgcgcaaggtgcgcgaggtgcgttcccagttaaaggacatcatggttcagcagaagatg
aacctcatgtcctgtggctcggactgggacatcatcagaaagtgtatctgtgctgcttac
ttccaccaggcagccaagctcaagggcatcggtgaatatgtgaacgtgaggacaggcatg
ccatgccacctccaccccaccagctccctgttcggtatgggctacacccccgactacatc
atctaccatgagctcgtgatgaccacaaaggagtacatgcagtgtgttactgctgtggac
ggagagtggctggcggagctgggacccatgttttacagcatcaaacacgcaggaaagagc
agacaggagaaccgtcggcgggccaaggaggagctgagcaacatggagcaggagatggtc
ctggctcaggagcagctgagggcgcgtcgagaggagcaggagaagaagagcaacacctgc
agcgtgagggcagtgaaaatctgcacaccagggagaaaagaggaggcacccatgactccc
agacgcaccccggcccgctttggactgtaa
DBGET
integrated database retrieval system
