Poecilia reticulata (guppy): 103468917
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Entry
103468917 CDS
T05149
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103468917 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pret03041
]
103468917 (ddx42)
Enzymes [BR:
pret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103468917 (ddx42)
Spliceosome [BR:
pret03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103468917 (ddx42)
Complex B
103468917 (ddx42)
Complex C
U2 SnRNP specific factors
103468917 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
103468917
NCBI-ProteinID:
XP_017161733
UniProt:
A0A3P9NYP3
LinkDB
All DBs
Position
LG8:17451096..17462720
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AA seq
941 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEEPNVPPKSHTTVGASGSSGGYGKSPQLPSFYKIG
SKRANFDEENAYFEDDEEESSSNADLPYIPAENSPTRQQMKSGGGGGSDSEDDPLDAFMA
EVENQAAKDMRKLEEKEKKSSKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEDENIDY
DSDGNPIPSTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEELSILNGSQVLELRQKLNLR
VSGAAPPKLCTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SVASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVELLLSGS
DKWNWLTRRLVEFTSTGSVLIFVTKKANSEELATNLTQEGYSLGLLHGDMDQSERNKVIS
DFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TSKDTSFAGDLVRNLEGANQAVPKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYKE
RPGLGAESSERSSSLSSASSFEGYSKPTTGAMGDRMSALKQAFQAQYKSHFVAATSGPPK
LSTKSSSSSGWTSAGSLSSVPTEAANGSERPNMAAFSMPGFTSAGSLSSVPACPTGSQHS
SPPPAPPTHRETPRERHGESQGRPGDGHHRHSDRSERHSGEDRYGDRDRHGDRDRDRHGD
RDRHSSRHSDTRNGDGSRRERDDRRGDRDGGDRGSGEGRDRASVEGRDRGSVDGRDRGSV
EGRDRGSVEGRDRGSGDGRDRGDDSFAVPDPPKRRKSRWDN
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggcggtccaggagtgaagcgtgggtttggttttggaggtttttcc
cttgcagggaagaaagaggagcctaatgttcccccaaaatctcacacaacagttggcgct
tctggatcaagtggtggttatgggaaaagcccacagcttccgtctttctacaaaataggg
tctaaaagagctaattttgatgaagaaaacgcgtatttcgaagacgatgaagaagagtcc
agcagcaacgccgatctgccctacattcctgctgagaactcgcccacgcggcagcagatg
aagtcgggcggcggcggcggctcagacagcgaagacgacccgttggacgccttcatggca
gaggtcgagaaccaagcagctaaagacatgaggaaactagaagaaaaggagaaaaaatca
tccaagggtattcgtgatgacattgaggaagaagatgaacaggaagcgtatttccgctac
atggcagagaatcccacagcggggctgacccaggaggaagaggacgaaaacatcgactat
gacagtgatggaaacccaattccttctacaacaaagaaaataatcctgccgctgccacct
attgaccactcagagatcgactaccccccatttgagaaaaacttttacaatgaacacgag
gagctgagcattctcaacggcagccaagtgctggagttgaggcagaaactcaacttgaga
gtttctggtgctgctcctcctaaactttgcaccagctttgctcactttggcttcgatgag
cagctaatgcatcagattcgaaagtctgagtacactcagcccacgccgatccagtgtcag
ggagtccccattgctctctctggacgcgacatgatcggcattgcaaaaacaggaagtggt
aaaacggcggcgttcatctggccgatgctggttcacatcatggaccagaaggagctggag
cccggagagggacccatcgcggtcatcgtgtgtcccaccagggagctctgtcagcagatc
catgcagagtgtaagcgttttgggaaagcgtactcgctgcgttctgtggctgtttacgga
ggcggcagcatgtgggagcaggccaaggctctgcaggagggagcagagatcgtcgtttgc
acgccgggtcgcctgatcgaccatgttaaaaaaaaggccacatccttacagagagtgacg
tatctggtgtttgatgaagctgatcgcatgtttgatatgggatttgagtatcaggtgaga
tcagttgcaagccatgttcgcccagacaggcagactcttctcttcagcgccacttttcgt
aaaaagatcgagaggttggcgagggacattttagttgatcctattcgggttgtgcaaggc
gacatcggagaggccaacgaagacgtgactcaggtggtggagctgctgctcagcgggtca
gacaaatggaactggctgacccgaaggctggtcgagttcacttccaccggttctgtgctc
attttcgtcaccaagaaggccaactctgaggagctggctactaacctgactcaggagggc
tacagcctcggcctcctgcacggagacatggaccagagcgagaggaacaaagtcatcagc
gacttcaagaagaaaaatttacccgttctggtggccactgacgtagccgcccgcggtctg
gacatcccgtcaattcgcaccgtggtgaactacgatgtggcgcgcgacatcgacacacac
actcacagaatcggccgaacgggtcgcgccggggagaaaggtgtcgcttacaccctcctg
accagcaaagacacttcgtttgcaggcgacctggtgcgaaacctggagggagccaatcag
gccgttcccaaagagctcatggatttagccatgcagaatccctggttcaggaaatcgcgg
tttaagggaggaaaaggaaagaagctgaacatcggtggaggcggccttggttacaaagag
agaccgggtctgggggccgagagctctgaacgaagcagcagcttgtcttccgctagtagc
tttgaaggctacagcaaaccgacaactggggcgatgggggaccgcatgtctgctctgaaa
caagctttccaggctcagtataagagccactttgtggcggcaaccagcggccctccgaag
ctcagcaccaagtccagcagctcctccggttggaccagcgccggcagcctgagctcggtg
ccaacagaggccgccaacggctctgagcgacccaacatggccgccttttcaatgcctggt
tttaccagcgccggctccctgagctccgtgcccgcctgtccaaccggctcacagcacagc
agccctccacccgcacccccgacacacagagagaccccgcgggagcgacacggggagtcc
cagggtcgccccggcgacggccatcaccgccacagcgacaggagcgagcggcatagcggc
gaggatcgctacggtgaccgggaccgacacggagaccgagatcgcgaccgccatggtgac
agggatcgccacagcagccgccacagcgacacccgaaatggcgacggaagcagaagagag
agagatgaccggagaggggacagggatggcggagacaggggaagcggggaggggagagac
agggcaagtgtggaggggagggacagggggagcgtggacgggagggacagggggagcgtg
gaggggagggacagggggagcgtggaggggagggatagggggagcggggacgggagggac
aggggagacgatagcttcgctgttcccgacccgccgaaacgcaggaagagcagatgggat
aactaa
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