Poecilia reticulata (guppy): 103481655
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Entry
103481655 CDS
T05149
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret04510
Focal adhesion
pret04512
ECM-receptor interaction
pret04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103481655
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103481655
09142 Cell motility
04820 Cytoskeleton in muscle cells
103481655
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pret00536
]
103481655
Glycosaminoglycan binding proteins [BR:
pret00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103481655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
103481655
NCBI-ProteinID:
XP_008435501
LinkDB
All DBs
Position
LG19:complement(15869282..15888550)
Genome browser
AA seq
1447 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDKQFGSCTSEGQSYNDKDVWKPEPCQICVCDMGT
ILCDEVICEDTSDCEDPYIPDGECCPVCPDGEGPPTEPTIPKGPDGPRGDPGLPGLPGND
GIPGQPGLPGPPGSPGPPGLGGNFSPQMSYFDPSKSSGPPVPGPIGPPGPRGVPGLPGPP
GPSGSAGPQGEPGEPGAVGPMGPRGPAGPPGKNGDDGEAGKAGRPGERGAAGPQGARGFP
GTPGLPGIKGHRGFPGLDGSKGDGGPAGPKGEPGVPGENGIPGAMGARGLPGERGRPGPA
GPAGARGNDGNTGPAGPPGPTGSAGPPGFPGAVGAKGETGPAGGRGSEGPQGARGEPGNP
GPSGPAGPAGSPGSDGQAGAKGANGAPGIAGAPGFPGNRGPAGAQGGAGAPGPKGNNGEP
GPPGPKGEAGAKGEPGPAGLQGLPGPSGEEGKRGPRGEPGGAGPRGPPGERGAPGARGFP
GSDGAAGGKGAPGERGAPGQMGSQGATGEGGSXGAPGAPGSKGVTGSPGSPGPDGKVGPA
GAPGQDGRPGPPGPAGSRGQPGVMGFPGPKGASGESGKGGERGPGGAAGPVGAPGKDGDV
GAPGPSGPGGPAGEKGEQGPSGAPGFQGLPGPQGATGESGKPGEQGVPGEAGPPGPSGPR
GDRGFPGERGGPGPAGPTGARGAPGAGGNDGPKGEPGAGGAPGSAGLPGMQGMPGERGSA
GVPGPKGERGDAGAKGSDGTSGKDGVRGLTGAIGLPGPPGSQGEKGEAGPSGIVGPSGPR
GSPGERGETGPAGPAGFAGPPGADGQPGAKGESGDSGPKGDAGPAGPPGPFGSAGPQGPA
GSTGPKGARGGAGSPGATGFPGPAGRVGPPGPSGASGPPGPVGPVGKDGPRGSRGETGPA
GRPGESGAAGAPGPSGEKGSPGSDGSPGTPGLPGPQGIAGVRGIVGITGQRGERGSTGIP
GPAGEPGKQGPSGLVGERGPPGPGGPPGLSGAPGEAGREGSSGHDGAPGRDGPPGPKGDR
GESGNAGPPGPPGAPGAPGAVGPSGKSGERGESGPAGPAGPAGITGPRGSTGAAGAKGDR
GEAGEAGDRGHKGHRGLSGQPGLPGPPGVHGDRGPAGASGPAGPRGPSGNNGSPGKDGQN
GMPGPIGPPGPRGRNGELGPSGPPGPPGPPGPPGAPGSAFEFVAPPQQEKGPDPLRGGYR
ADDPNMMRDRDMEVDTTLKTLTQKVENIRSPDGSQKSPARMCRDLRMCHPEWKSGTYWVD
PNQGSSLDAIQVHCNMETGETCVYPIDSNIPMKNWYLSKNLREKKHIWFSESMTGGFQFQ
YGTEGADPEDVNIQISFMRLMSNQASQNVTYHCKNSIAYMDSATGNLKKALLLQGSNDVE
IRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTTRLPIIDIAPMDVGAPDQEFGVE
VGPVCFL
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgcttttgctcagcgcaacagtgcttttggcg
agaggtcaaggcgaggatgataagcaatttggcagctgcacatcagaaggacagtcgtac
aacgacaaggatgtatggaaaccagaaccctgccagatctgcgtgtgcgacatggggacc
atcctctgcgacgaggtgatctgcgaggacacgtccgattgtgaagacccctacattcca
gatggagagtgctgccctgtctgccccgatggcgagggtcctcccactgaacctacgatt
ccaaagggacccgatggccccagaggagatccgggtcttcctggtctccctggcaatgat
ggaatccccggacagcctggccttcccggcccacctggctcccctggcccccctggcctt
ggtggaaacttctctcctcaaatgagctacttcgacccctccaagtccagcggcccaccc
gtccccggcccaattggtcctcctggtccccgtggtgttcctggtcttccyggcccacct
ggtccttcaggtagcgcaggaccccaaggagagcctggtgagcccggtgctgtgggtcca
atgggtccccgyggtcccgcaggccctcccggaaagaacggcgatgatggtgaagctggt
aaagctggacgccccggtgagcgcggagctgctggccctcagggtgctcgtggattcccc
ggaacccccggactgcccggcatcaagggacacagaggtttccctggtcttgatggctcc
aagggagacggcggacctgctggtcctaagggagagcctggtgtccccggagagaatggc
atcccaggcgccatgggtgcccgtggtcttcctggtgagagaggccgccccggacctgct
ggccctgctggtgctcgtggtaacgatggcaacaccggtcctgctggtcctcccggaccc
accggatctgccggaccccctggattccccggtgctgtcggtgctaagggtgagaccgga
cctgccggaggtcgtggatctgagggaccccaaggagcccgtggtgagcctggtaaccca
ggaccttctggacccgctggacctgctggttctcctggatctgatggtcaggctggtgct
aaaggtgctaatggcgctcccggtatcgctggtgctcctggtttccccggtaaccgtggt
cctgctggagctcagggaggcgctggtgctcccggtcccaagggtaacaatggcgagcct
ggtcctccaggtcctaagggagaggctggtgccaagggtgagcctggcccagctggactt
cagggacttcctggcccctctggtgaggagggaaagagaggacctcgtggagagcctggt
ggtgctggaccccgtggaccccctggagagcgtggtgcccccggtgctcgcggcttccct
ggttctgatggagctgctggtggaaagggcgccccaggtgagcgcggtgcccccggacaa
atgggatctcagggagccactggtgagggcggaagcyccggcgctcctggcgctccagga
tcaaagggtgtgaccggtagccccggaagccccggccctgacggcaaagtcggacctgct
ggtgctcctggtcaagatggccgccccggacctcccggccccgccggatccagaggacag
cccggagtcatgggattccccggacccaagggagcctctggcgaatctggtaaaggtggc
gagagaggacctggtggagctgctggcccagttggtgctcccggcaaagatggtgatgtt
ggagctcctggaccttctggacctggtggacctgctggagagaaaggagagcagggacct
tctggtgcaccaggattccaaggtcttcctggaccccaaggtgctactggtgagagcggc
aagcctggcgagcagggcgttcctggagaggcyggaccacctggcccatctggacccaga
ggtgacagaggcttccctggtgagcgtggcggtcccgggcctgccggtccaactggagcc
cgtggcgcccctggtgctggtggaaacgatggacctaagggagagcctggagctggtggc
gcccccggtagtgcgggactccctggtatgcagggaatgcctggagagcgaggatctgcc
ggtgttcctggacccaagggagagagaggagatgctggtgctaagggttctgatggcacc
tctggcaaagatggcgtgcgcggtctgactggtgctattggacttcctggacctcctggt
tctcagggtgagaagggagaggctggtccctctggaatcgttggaccctctggtcctcgt
ggttcccctggtgagcgtggagagactggacctgctggacctgctggatttgctggacct
cctggtgctgatggtcagcctggtgccaagggagagagtggtgactccggaccaaaggga
gacgctggccctgctggacctcctggaccttttggatctgccggtcctcagggacctgct
ggttctactggacccaaaggtgctcgtggtggtgctggatctcctggtgctactggtttc
cctggacctgccggcagagttggaccccctggcccctctggagcttctggaccccccgga
cctgttggacccgttggaaaggacggaccccgaggatctcgcggtgagaccggccctgct
ggtcgccctggtgagtctggtgctgccggtgctcccggycccagtggagagaagggatcc
cctggctctgatggatcccctggtactcccggtctgcctggaccccagggtatcgctgga
gtgagaggtatcgtaggtatcactggacagcgtggagagcgtggttccactggtatccct
ggacccgctggtgagcctggtaagcagggaccttctggccttgttggtgagcgtggaccc
cctggacctggtggaccccctggactgtctggtgccccyggagaggctggtcgtgaggga
tcttctggtcatgatggtgctcctggtcgtgacggtcctcctggccctaagggagaccgt
ggtgagagtggcaatgctggaccccctggacctcctggtgctcctggagcccccggagct
gtcggcccctctggcaaaagcggtgaacgcggagagagtggtcctgctggtcccgctggt
cctgctggcattactggaccccgtggttctactggcgctgctggtgctaagggagacaga
ggagaggctggtgaggctggagatagaggccacaagggacacagaggactcagcggacag
cctggtctgcctggacctcctggagttcacggagacagaggacccgctggtgcttccgga
cccgctggacccagagggccatctggaaacaacggttcccctggtaaggatggacagaac
ggtatgcccggacccatcggaccccctggacctcgtggtcgcaatggagagctgggacct
tctggtccccctggacctcctggaccccctggacctcctggagcccctggcagcgccttt
gaattcgttgcaccaccccagcaggagaagggcccagatcctctccgtggtggctaccgc
gctgatgaccccaacatgatgcgtgaccgcgacatggaggttgacaccaccctgaagacc
ctgacccagaaggttgagaatatccgcagccccgacggctcccagaagagccctgctcgc
atgtgccgtgacctgaggatgtgccaccctgaatggaagagcggcacatactgggttgac
cccaaccagggctcttctctggacgccatccaggtccactgcaacatggagactggagag
acctgcgtctaccccatcgattccaacatccccatgaagaactggtacctcagcaagaac
ctcagagagaagaagcacatctggttcagcgagtccatgaccggtggattccagttccag
tatggcaccgagggagctgatcccgaggacgtcaacatccagatctccttcatgcgcctg
atgtccaaccaggcctcacagaacgtgacatatcactgcaagaacagcatcgcctacatg
gattctgcaacaggcaacctgaagaaggccctccttctccagggctccaatgatgtcgag
atcagagccgagggcaacagccgcttcacatacagcgtcagcgaggatggctgcacgtca
cacactggcacatggggcaagacagtcatcgactacaagacatcgaaaacaacccgactg
cccatcattgacattgctcctatggatgttggtgcacccgatcaggaatttggcgtcgaa
gttggccccgtttgcttcttgtaa
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integrated database retrieval system
