Pseudomonas rhizosphaerae: LT40_12535
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Entry
LT40_12535 CDS
T03339
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LT40_12535 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prh03400
]
LT40_12535 (ligD)
Enzymes [BR:
prh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LT40_12535 (ligD)
DNA repair and recombination proteins [BR:
prh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LT40_12535 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AIS18166
UniProt:
A0A089ZQT0
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Position
2767067..2769655
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AA seq
862 aa
AA seq
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MTKALEEYNRKRDFDATSEPSGTARVGKRGKATKALQFCIQKHDASHLHYDFRLELDGTL
KSWAVPKGPSLDPQARRLAVHVEDHPLDYASFEGNIPDGHYGAGDVIVWDRGIWIPEGDP
RQAYEKGKLKFVLQGEKLSGTWNLVKTHMPGKREQWFLIKSKDDAARPLAEYDVLVAEPD
SVISERTLVPRKRATKAAAKPVNKPAAKPTPKRAKGKGIQLEGAKAADLPATLKPELATL
VDSAPEGDWCYEIKFDGYRIVARIDGDQVSLFTRNGHDWTAKMPRQAKALADLGLQSAWL
DGEVVVANEEGVPDFQALQNAFEDERSDKIVFYLFDLPYLNGMDLRAVPLEQRRGALAKV
LETNTEDALKFSDDLAGSAESLLDSACQMNMEGLIGKRVGSPYVSRRSSDWIKLKCKRRQ
EFVIAGYTEPKGSRSGFGALLLGLHDADSGELRFAGKVGTGFSESTLRTLLAQLQALETD
RPALANPPKGAQARGVHWLKPTLLAEVAYAEMTRDGAVRHAVFHGLRTDKLAKEITSEMP
AAKSSTSAKPAGKPAKKPRKAATKADDADLVGQVRITHPERVINASSGTTKMQLAEYYGR
ISPWLLPHLKQRPVALVRAPDGVGGELFFQKHAGHLAIPHILTFDKEQAGQAAMVINDGQ
ALLGAVQMGTVELHTWNATTKDFQHPDRFVLDLDPDPALPWKSMVEATQLTQTLLDELGL
ASFLKTSGGKGMHVVVPITRKLGWDEVKAFSRAVVEHMAKLMPERFTAVSGPKNRVGRIF
IDYLRNGLGATTACAYAARARDGLPVSVPVTREEVAQIKGGDQWDIDSVLERLAELEEDP
WADFFSTRQSITVAMRKKLGLK
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaggctctggaggaatacaaccgcaagcgtgacttcgacgccacctcggagcct
tctggcaccgcacgcgtcggcaagcgcggcaaggccacgaaggccctacagttttgcatt
cagaagcatgatgccagccacctgcactatgatttccgcctggaactcgacggcaccctc
aagagctgggcggtgccgaagggtccctcgctcgacccccaggctcggcggctggccgtg
catgtcgaggaccatccgctggactatgcgagcttcgagggcaacattcccgacgggcac
tacggcgccggtgacgtcattgtctgggatcgtggtatctggattcccgaaggcgatcct
cgccaggcctatgaaaaaggcaagctcaagttcgtcctgcagggcgagaagctgagcggc
acctggaacctggtcaagactcacatgcccggcaagcgtgagcagtggtttctgatcaaa
tccaaggacgatgccgcacgcccgttggccgagtacgacgtgctcgtcgccgaacccgac
agcgtcatcagcgaacgcaccctggtgccgcgcaagcgcgccacgaaagccgccgcgaaa
ccggtgaacaaacctgcagccaagcccacgcccaagcgcgcaaaaggcaaaggcatccaa
ctggaaggcgccaaggcggctgacttgcctgccactttgaaacccgaactggcaaccttg
gtggacagcgcgcccgaaggcgactggtgctacgagatcaagttcgacggctaccgcatc
gtcgctcgcatcgacggcgatcaggtcagcctgttcacccgcaacggccacgactggacc
gcgaagatgccgcgccaggccaaagcactggctgacctgggtttgcagtcggcatggctg
gacggcgaagtggtagtggccaacgaagagggcgtaccggatttccaggccttgcagaat
gcgttcgaagacgagcgcagtgacaagatcgtgttctacctgttcgatctgccctacctc
aacggcatggacctgcgcgccgtgcctttggagcaacgtcgcggtgccttggccaaggtg
ttggaaaccaacacggaggacgcgctgaagttctccgacgacctcgcaggttcggctgaa
tcgctgctcgacagcgcttgccagatgaacatggaaggcctgatcggcaagcgtgtcggc
agcccttatgtctcgcggcgcagcagcgactggatcaagctcaagtgcaaacgccggcag
gagttcgtcatcgcaggctacaccgagcccaagggcagccgcagtggcttcggcgccctg
ttgctgggcttgcatgatgccgacagtggcgagttgcgcttcgccggcaaggtcggtacc
ggcttcagcgaatccaccttgcgcaccctgctcgcccagctgcaggcactggaaaccgac
cgcccggcgctcgccaatccgcccaagggcgcccaggcccgtggcgtgcattggctcaag
cccacgctgttggcggaagtggcctatgccgaaatgacccgcgacggcgctgtccgccac
gcggttttccacggcttgcgcaccgacaagctcgccaaggagatcacgtccgaaatgcca
gcggccaaatccagcacgtccgccaaaccggcaggcaagccagcaaagaagccgcgcaag
gcagccaccaaggccgacgacgccgacctggtcgggcaggtgcgcattacccatccggag
cgggtgatcaatgcctccagcggtaccaccaagatgcagctggccgaatactacggacgc
atttcaccctggttgctaccgcatctgaaacagcgtcccgtggcgctggtacgggcgccc
gacggggtgggcggcgagctgtttttccagaagcacgccggccacctggcgatcccgcac
atccttactttcgacaaggaacaggcaggccaggccgccatggtcatcaacgatggtcag
gcactgctgggcgcggtgcaaatgggcaccgtggaactgcacacctggaacgcaaccacc
aaggattttcagcaccccgaccggttcgtgctcgacctcgacccggatccagccctgccc
tggaaaagcatggtcgaagccacccaactgacgcagaccctgctcgacgaactgggcctt
gcatcgtttctcaaaaccagcggcggcaagggtatgcacgtggtggtgccgattacccgc
aagctaggctgggacgaggtcaaagcgttcagccgcgccgtggtcgaacacatggccaag
ctgatgccggagcgcttcacggctgtctccggcccgaaaaaccgggtcggccggatcttc
atcgactacctgcgcaacggtctgggcgcgaccaccgcctgcgcctatgcggcgcgggct
cgggatggcttgccggtgtcggtgccggttacccgggaggaagtggcccagatcaagggt
ggtgatcagtgggacatcgacagcgtgctcgaacgcctcgccgagctggaagaagatccc
tgggcagatttcttcagcactcgccagagcatcaccgtcgccatgcgcaagaagctcggg
ctcaaatga
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