Pseudomonas rhizophila: CRX69_17480
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Entry
CRX69_17480 CDS
T09779
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
prhz
Pseudomonas rhizophila
Pathway
prhz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
prhz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CRX69_17480 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prhz03400
]
CRX69_17480 (ligD)
Enzymes [BR:
prhz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CRX69_17480 (ligD)
DNA repair and recombination proteins [BR:
prhz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CRX69_17480 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AVU76897
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All DBs
Position
3853708..3856296
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AA seq
862 aa
AA seq
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MSSKTLEDYNRMRDFAATPEPAAKRSRKSAKTAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQGDA
HEAYEKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDAAARPESEYDVVQAEPD
SVLSERTLVPKRRGKAAAQVKAVQQPKKATTPKPSRKTSTTTLSGAVAGAIPKTLKPELA
TLVERAPEGEWLYEIKFDGYRVMARIENDDVRLITRNGHDWTHKLPKQAEALAGLGLESA
WLDGEMVVPNEQGVPDFQALQNAFDAGSSNKIAYYLFDLPYLNGMDLREVPVQERRAALA
AVLASNKNPLLRFSDAFKETPEALLNSACQMQMEGLIGKRMGSAYVSRRSNDWIKLKCKN
RQEFVVVGFSEPKGARNGFGALLLGLHDADSGQLRYAGKVGTGFNEQTLTSIHQQLLPLE
RKEAAVVNPPTGYDAKGVHWLEPTLLAEVAFAEMTKEGSVRHAVFHGLRNDKPAEAITQE
LAKPVKKTAEKTKAKTKTKTTQAPAMDGKVRITHPERVIDPSSGTTKLQLAEYYASVAEF
ILPELADRPVALVRAPDGIAGELFFQKNAERLAIPGITTLDKSLTGQPVMIINNPEALIG
AVQMSTVELHTWNATSVNLDKPDRFVLDLDPDPALPWKSMVEATHLTLSVLDELGLKAFL
KTSGGKGIHIVVPLTRKLGWDEVKGFSHAIVSHMAKLLPDRFSAVSGPKNRVGRIFIDYL
RNGLGATTICAYAARTREGLPVSVPIFREEVAELKGANLWTVHNVHERLAQVGHEPWAGL
KKTRQSITADMRRRIGMKKTDK
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaagaccctggaggattacaaccggatgcgtgacttcgccgccaccccggag
ccggcggccaagcgttcacgcaaatcggcgaaaaccgcccatgccttgcagttctgcatt
cagaagcacgacgcttcacggctgcattatgacttccggctggagctggacggtgcgctc
aagagttgggcggtgcccaaggggccgtccctggaccccaaggtcaagcgcctggcggtg
catgtcgaagaccatccgctggattacgcgaccttcgaaggcagcattcccgaaggccat
tatggcgctggcgacgtcattgtctgggaccgcggcgtgtggattccccagggcgatgcc
catgaggcctatgaaaaaggccggctcaagttcgagctgcaaggggaaaaactcagtggc
ctgtggaacctggtacgcacccacatgcccggcaagcaggagcagtggttcctgatcaag
caccaggacgcagcggcacgtcccgaaagcgagtacgacgtggtccaggccgagccggac
agcgtgctcagcgagcgcacccttgtacccaaacgccgtggcaaggctgccgcccaggtc
aaggcagtgcagcaaccgaaaaaagccaccacgcccaaaccgtccagaaaaacttcgacc
acgaccctcagcggcgcggtggccggggcgattcccaagacgctcaaaccggaattggcc
acgttggtagagcgcgcgcctgaaggcgaatggctctatgaaatcaagttcgacggttac
cgcgtcatggcccgcattgaaaacgacgatgtcaggctgatcacccgcaatggccatgac
tggacccacaagctgcccaagcaggccgaagcgctggccggattagggctggagtccgcc
tggctggacggtgaaatggtggtgcccaatgagcaaggcgtaccggacttccaggccctg
cagaacgctttcgacgccggcagcagcaacaagattgcctactacttgttcgatctgcct
tacctcaatggcatggacctgcgcgaagtgcccgtgcaagagcggcgggccgcgttggcg
gcagtgcttgcgagcaacaagaatccgctgttgcgcttctccgatgccttcaaagaaacc
cctgaagccttgctcaacagtgcttgccaaatgcagatggaaggactgatcggcaaacgg
atgggcagtgcctacgtttcccggcgcagcaacgactggatcaagctcaagtgcaagaat
cgccaggagttcgtcgtagtcggtttcagcgagcccaagggtgctcgcaacggcttcggc
gccttgttgctggggctgcacgatgccgacagcgggcaactgcgctatgccggcaaggtc
ggcacagggttcaacgagcaaacactcacaagcattcaccagcaattgttgcccctggaa
agaaaagaggctgcggtggtcaacccacccaccggatatgacgccaaaggtgtgcactgg
ctggaaccgacgctgctggctgaagtggcgtttgccgaaatgaccaaggaaggctcggtg
cgccatgccgtgtttcatggtttgcgcaacgataaaccagccgaggcgatcacccaggag
ctggccaaacccgtgaaaaagactgcggaaaaaaccaaagccaaaaccaaaaccaaaacc
actcaggccccagccatggacggtaaggtgcgcatcacccaccctgagcgagtcatcgat
cccagcagcggcacgaccaagctgcaactggccgagtactacgccagcgtcgccgagttc
atcctgccggaactggccgaccgcccggtggcactggtcagggcaccggatggcattgcc
ggtgagttgtttttccagaaaaacgccgagcgcctggcgattcctggtatcaccaccctg
gacaaatcattgaccgggcagccggtgatgatcatcaacaatcccgaagcgttgatcggc
gcggtgcagatgagcacggtggaattgcatacctggaatgccacgtcggtgaacctggac
aagcctgatcgctttgttctcgatcttgacccggatccggccctgccttggaaaagcatg
gtggaagcgacgcatctgaccttgtcggtactcgatgaactagggctcaaggcgtttctc
aagaccagcggcggcaaaggcatccacattgtcgtgcccttgacccgcaagttgggttgg
gacgaggtcaagggcttcagtcatgcgattgtcagccacatggccaagctgttgccggat
cgcttctcggcggtctccgggccaaagaaccgggtagggcggatcttcatcgactacctg
cgtaacggcctgggcgccaccaccatctgcgcctatgccgcccgtacccgtgaagggttg
ccggtgtcggtgccgatctttcgcgaggaagtggccgaactcaaaggcgcgaacctgtgg
accgtgcacaacgtccatgagcgtttggcgcaagtgggtcacgagccttgggcgggcctg
aagaagacccgccaaagcatcaccgccgacatgcgtcgacgcattggtatgaaaaagacc
gataaatag
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