Pseudomonas rhizophila: CRX69_22115
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Entry
CRX69_22115 CDS
T09779
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prhz
Pseudomonas rhizophila
Pathway
prhz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prhz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CRX69_22115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prhz03400
]
CRX69_22115
Enzymes [BR:
prhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CRX69_22115
DNA repair and recombination proteins [BR:
prhz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CRX69_22115
BRITE hierarchy
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVU77734
LinkDB
All DBs
Position
4864330..4867779
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AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
QFLLGSSLVLDIGQKLDVEQMRSRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSVRLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGVGRERFPAKALPDL
AIEAKATQPLAALAGFLDGFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KDRLAITIAPLNDGLVLEDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFP
FEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTWLKLKAEQLGIKKV
DGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVEAL
FERLTPTPA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctcccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgctgcaaagcgcttt
accctgctgctgaccgccgacagccaaagcgccgagcggctcgaacaggaactgagtttc
ttcgccccggatttgcctgtgctgcatttcccggactgggaaaccctgccctacgatctg
ttttcgccccaccaggacatcatttcccagcgaatcgccagcctttatcgattgccggag
ctcagtcatggcgttttggtagtgccgatcaccacggccctacatcgtctggcaccgacc
cagtttttgctcggcagcagcctggtgctggacatcggccagaagctcgacgtcgagcaa
atgcgcagccgtcttgaagccagtggctatcgttgcgtcgacacggtgtacgagcacggc
gagttcgcggtacgcggcgcgctgatcgatctgttcccgatgggcagcaagttgccttac
cgcatcgacctgttcgatgacgaaatcgaaaccctgcgcactttcgacccggaaaaccaa
cgctccatcgacaaagtacagtcggtgcgcctgctgccggccaaggaattcccgctgcaa
aaagacgccgtgacccgcttcaaggcgcgctttcgcgaacgcttcgatgtggatttccgt
cgctgcccgatcttccaggacctgagcagcgggatcactcccgccggtatcgagtactac
ctgccgctgtttttcgaagaaacctccaccctgttcgattacctgccccaggacacccag
gtgttttccctgcccggcatcgagcaggcggcggaaaacttctggaacgatgtgcgcaat
cgctacgaagagcgccgcgtcgatccttcccggcctttattgccaccggccgagctgttc
ctgccggtggaagactgctttgcccggctcaagaactggccacgcgtggtggcaagccag
caggacgtggaaacgggcgtcggccgcgaacgcttcccggccaaggccttgccggacctg
gcgatcgaagccaaggccacgcagccactggcggccctggccggttttctcgacggtttc
cccggccgcgtgctgttcaccgccgaatccgccggtcgtcgtgaagtgctgctggaactg
cttgaacgcctgaaactgaggccgaaaaccgtcgatagctggccagacttcgtcgccggc
aaagatcgcctggcgattaccatcgcgccgctgaacgatggccttgtcctggaagacccg
gccctagcgctggtggccgaaagcccgttgtttggtcagcgcgtcatgcagcgtcggcgt
cgcgagaaacgcgccgacgccgccaacgacgcggtcatcaagaacctcaccgagctgcgc
gaaggcgcgccagtggtgcacatcgaccacggcgtaggccgctacctgggtctggcgacc
ctggaaatcgacaaccaggccgccgaattcctcaccctggaatacgccgagggtgccaag
ctctacgtgccggtggcgaacctgcacctgatcgcccgctacaccgggagcgacgacgcc
ctggcgccgctgcatcgcctgggttcggaaacctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgagttgctggacatctatgcccggcgcgccgcccgc
gaggggtatgccttcgccgacccgaaagccgactacgagaccttcagcgccgggttcccc
ttcgaggaaaccgtcgaccagcaaaccaccatcgaggccgtgcgcgctgacatgctcgcg
cccaaaccgatggaccggctggtgtgcggcgatgtcggtttcggcaagaccgaagtggcg
atgcgcgccgcattcattgccgtgcacggcggcaagcaggtggcaatcctggtgcccacc
accctgcttgcccagcagcactacaacagtttccgcgaccgcttcgccgactggccggtg
accgtggaggtgatgagccgcttcaagtccaccaaggaagtgaacgcggcggtggccgat
ctggccgagggcaagatcgacatcgtcatcggcacgcacaaactgctgcaggacgatgtg
aagatcaaaaacctggggctggtgatcatcgacgaagagcaccgctttggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaggtcgacatcctgaccctgacggccacgccg
atcccgcgcacgctgaacatggcggtgtcgggcatgcgtgacctgtcgatcatcgccacg
ccgccggcccgtcgcctgtcggtgcgcaccttcgtcatggagcagaacaaaagcacgatc
aaggaagccctgctgcgcgagctgctgcggggcggccaggtctattacctgcacaacgac
gtcaagaccatcgagaaatgcgccgccgacctggccgagctggtgccggaagcccgcatc
ggcatcggccacgggcagatgcgcgaacgtgaactcgaacaggtgatgagcgatttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgatgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaaattcggcctggcccagttgcaccag
ttgcgcggtcgggtcgggcgcagtcaccaccaggcctacgcctacctgttgacgccaccg
cgccagcagatcaccccggacgcggaaaagcgcctggaagccatcgccaacacccaggac
ctgggcgccggtttcgtgctggccaccaacgacctggaaatccgcggtgcaggcgagttg
ctgggcgacggccagagcggccagatccaggccgtgggtttcaccctgtacatggaaatg
ctcgaacgggcggtcaagtcgatccgcaagggtgagcaaccgaacctcgaccaaccgttg
ggcggcgggccggaaatcaatctgcgggtgccggcgctgatcccggaagactacctgccg
gatgtccacgcacggctgatcctctacaaacgcatcgcctcggccactgacgaagaaggc
ctcaaggacctgcaagtggagatgatcgaccgcttcggcctgctgccggagccaaccaag
aacctggtgcgtaccacctggctcaagctcaaggccgagcaactgggcatcaagaaagtc
gacggcggccccaatggtggtcgtatcgagttcgaagcccagacgccggtcgatccgctg
gtactgatcaagctgatccagggccagcccaaacgctacaagtttgaaggtgccacgatg
ttcaaattcatggtgcccatggaacgcccggaagagcgtttcaataccgtagaagcgctg
ttcgagcgcctcactccgacccctgcttga
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