Phodopus roborovskii (desert hamster): 127221659 Help Entry 127221659         CDS       T08852                                  Symbol Thbs1 Name (RefSeq) thrombospondin-1 isoform X1   KO K16857   thrombospondin 1 Organism prob  Phodopus roborovskii (desert hamster) Pathway prob04015   Rap1 signaling pathway prob04115   p53 signaling pathway prob04145   Phagosome prob04148   Efferocytosis prob04151   PI3K-Akt signaling pathway prob04350   TGF-beta signaling pathway prob04510   Focal adhesion prob04512   ECM-receptor interaction prob04820   Cytoskeleton in muscle cells prob05144   Malaria prob05165   Human papillomavirus infection prob05205   Proteoglycans in cancer prob05206   MicroRNAs in cancer prob05219   Bladder cancer Brite KEGG Orthology (KO) [BR:prob00001]  09130 Environmental Information Processing   09132 Signal transduction    04015 Rap1 signaling pathway     127221659 (Thbs1)    04350 TGF-beta signaling pathway     127221659 (Thbs1)    04151 PI3K-Akt signaling pathway     127221659 (Thbs1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     127221659 (Thbs1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     127221659 (Thbs1)    04148 Efferocytosis     127221659 (Thbs1)   09143 Cell growth and death    04115 p53 signaling pathway     127221659 (Thbs1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     127221659 (Thbs1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     127221659 (Thbs1)  09160 Human Diseases   09161 Cancer: overview    05206 MicroRNAs in cancer     127221659 (Thbs1)    05205 Proteoglycans in cancer     127221659 (Thbs1)   09162 Cancer: specific types    05219 Bladder cancer     127221659 (Thbs1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     127221659 (Thbs1)   09174 Infectious disease: parasitic    05144 Malaria     127221659 (Thbs1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:prob04131]     127221659 (Thbs1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:prob00536]     127221659 (Thbs1) Membrane trafficking [BR:prob04131]  Endocytosis   Phagocytosis    Opsonins     127221659 (Thbs1) Glycosaminoglycan binding proteins [BR:prob00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    127221659 (Thbs1) BRITE hierarchy Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_3 Laminin_G_2 cEGF TSP1_ADAMTS Laminin_G_3 TSP1_CCN EGF Laminin_G_1 Motif Other DBs NCBI-GeneID:  127221659 NCBI-ProteinID:  XP_051039669 LinkDB All DBs Position Unknown AA seq 1250 aa AA seqDB search MVQGSSAEPATARSQPASLDSCKQSRHSYPIPPLSLRAHRPPQRLHQTRCPCPSLHLCHH SRLLRPGAHRLSAGHKGSTMELAWGLGVLFLLHVCGSNRIPESGGDNSVFDIFEIIGAAR KGSGRRLVKGPDLSSPAFRIENANLIPAVPDDKFQDLLDAVWADKGFIFLASLRQMKKTR GTLLAVERKDHTGQIFSVVSNGKAGTLDLSLSLPGKQQVVSVEEAHLATGQWKSITLFVQ EDRAQLYIDCEKMESAELDVPIQNIFTRDLASVARLRVAKGDVNDNFQGVLQNVRFVFGT TPEDILRNKGCSSSATNVLLTLDNNVVNGSSPAIRTNYIGHKTKDLQAICGLSCDELSSM VLELRGLRTIVTTLQDSIRKVTEENRELASELRRPPLCFHNGVQYRNNEEWTVDSCTECH CQNSVTICKKVSCPIMPCSNATVPDGECCPRCWPSDSADDGWSPWSEWTSCSATCGNGIQ QRGRSCDSLNNRCEGSSVQTRTCHIQECDKRFKQDGGWSHWSPWSSCSVTCGDGVITRIR LCNSPSPQMNGKPCEGEARETKACKKEACPINGGWGPWSLWDICSVTCGGGVQRRSRLCN NPIPQFGGKDCVGDVTENQVCNKQDCPIDGCLSNPCFAGAKCTSYPDGSWKCGACPPGYS GNGIQCKDVDECKEVPDACFNHNGEHRCKNTDPGYNCLPCPPRFTGSQPFGRGVEHAMAN KQVCNPRNPCTDGTHDCNKNAKCNYLGHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPN EDLVCVANATYHCKKDNCPNLPNSGQEDYDKDGIGDACDDDDDNDKIPDDRDNCPFHYNP AQYDYDRDDVGDRCDNCPYNHNPDQADTDNNGEGDACAVDIDGDGILNERDNCQYVYNVD QRDTDMDGVGDQCDNCPLEHNPDQLDSDSDLIGDTCDNNQDIDEDGHQNNMDNCPYVPNA NQADHDKDGKGDACDHDDDNDGIPDDRDNCRLVPNPDQKDSDGDGRGDACKDDFDHDNVP DIDDICPENVDISETDFRRFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGY DEFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSG LSVKVVNSTTGPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGY IRVVMYEGKKIMADSGPIYDKTYAGGRLGLFVFSQEMVFFSDMKYECRDS NT seq 3753 nt NT seq  +upstreamnt  +downstreamnt atggtccagggctcctctgccgagccagccactgcccggagtcagccggcctcattggac tcctgcaagcaatcccgacacagctacccgatcccgccactgtctctccgggcgcaccgg ccgcctcagcgtctccaccagactcggtgtccttgtccttcgctgcacctttgccaccac tcccggctgctgcgcccgggtgcacataggctgagtgctgggcacaaaggctccaccatg gagctggcctggggactaggtgtccttttcctgttgcatgtgtgtggcagcaatcgtatt ccagagtctgggggagacaacagtgtctttgacatctttgaaatcatcggagctgcccgc aagggctctggccgcagactggtgaagggccctgacctgtccagcccagctttccggatt gaaaatgccaacctgattcccgctgtgcctgatgacaagttccaagacctactggatgct gtgtgggctgacaaaggcttcatcttcctggcttccttgaggcagatgaagaagactcgg ggcacactcctggctgtggagcggaaagatcatactggccagatcttcagtgtggtctcc aatggcaaagcaggcaccctggacctgagtctgagcctgccagggaagcagcaagtggtg tcagtggaggaagcccacctggccactggccagtggaagagcatcactctgtttgtacaa gaagacagggcccaactctacattgactgtgagaagatggagagcgctgagctggatgtg cccatccagaacatatttaccagggatttggccagtgttgccaggctccgggttgcaaag ggagatgtcaatgacaattttcagggggtgctgcagaatgtgaggtttgtctttggaacc accccagaagacattctcaggaacaaaggctgctccagctcagctaccaacgtcctcctc acccttgacaacaatgtggtaaatggttccagccctgctatccgcaccaactacattggg cacaaaacaaaggacctgcaagccatctgcggcctctcttgtgacgaactatccagcatg gtcctggaactcaggggcctgcgcaccatcgtgaccacactccaggacagcatccgcaaa gtgacggaagagaacagagagctggccagtgagctgaggcggcctcccctctgcttccac aatggagtccagtacaggaacaatgaggaatggactgtagacagctgcactgagtgccac tgccagaattcagttaccatctgcaaaaaggtgtcctgccccatcatgccctgctccaat gccactgttcctgatggtgaatgctgcccacggtgttggcccagtgactctgctgatgac ggctggtccccctggtctgagtggacttcctgctctgcaacatgcggcaatggaattcag caacgtggtcgctcctgtgacagcctcaacaacagatgtgagggctcttcagtacagaca aggacctgccacatccaggagtgtgacaagagatttaagcaggatggtggctggagtcac tggtccccatggtcatcttgttctgtgacctgtggtgatggtgttatcacaaggatccgg ctctgcaactctcccagcccccagatgaatgggaagccctgtgaaggagaagctcgggag accaaagcctgcaagaaagaagcctgcccaatcaatggaggctggggtccctggtcactg tgggatatctgctctgtcacctgtggaggaggagtgcagagacgcagccgactctgtaac aaccccataccccagttcggtggcaaagactgtgttggtgatgtcactgaaaatcaagtt tgcaacaagcaggactgtccaattgatggatgcctgtccaatccctgctttgctggtgcc aagtgtactagctatcctgatggtagctggaaatgtggtgcatgtcctcctggctacagt ggaaatggcatccagtgcaaagatgtcgatgagtgcaaagaagtacctgatgcctgcttc aatcacaacggagagcatcggtgtaagaacacagaccctggctacaattgtcttccctgc ccaccacgattcactggctcacagccctttggccgaggtgttgagcatgccatggccaac aaacaggtgtgcaatccacgaaacccctgcacagacgggacacacgactgcaacaagaat gccaagtgcaactacctgggccactacagtgaccccatgtaccgctgtgaatgcaagcct ggctatgcaggcaatggcatcatctgcggagaggacacggacctggacggctggcctaat gaggacctggtgtgtgtggccaacgcaacttaccactgcaaaaaggacaactgccccaac cttcccaactcagggcaggaagactatgacaaagatggaattggtgacgcctgtgatgac gatgatgacaacgacaaaatcccagacgatagggacaactgccccttccattacaaccca gcccagtatgactatgaccgagatgacgtgggagatcgctgtgacaactgcccatacaac cacaaccctgaccaagcagacacagacaacaacggagagggagatgcctgtgctgtggac atcgatggagatggaatcctcaatgaacgagacaactgccagtatgtgtacaatgtggac cagagggacactgacatggatggggttggagatcagtgtgacaactgccccctggaacac aatccagaccagctggactctgactcagacctcataggggacacctgtgacaacaatcag gacattgatgaggatggccatcagaataatatggacaactgtccctacgtgcctaatgcc aaccaggctgaccatgataaagatggcaaaggagatgcctgtgaccatgatgatgacaac gatggcattcctgatgacagggacaactgcaggctggtgcccaatcctgaccagaaggac tctgatggtgatggccgaggcgatgcctgcaaagatgactttgaccacgacaacgtgcca gacattgatgacatctgtcctgagaatgttgacatcagtgaaaccgatttccgcaggttc cagatgattcctctagaccccaaaggaacctcccaaaacgaccctaactgggttgtacgc catcagggcaaagaacttgtccagactgtaaactgtgatcctggtcttgctgtaggttat gatgagtttaatgccgtggacttcagtggtaccttcttcatcaacactgagagggacgat gactatgctggctttgtgttcggctaccagtccagcagccgcttctatgttgtgatgtgg aaacaagttacccagtcctactgggacaccaaccccacaagggctcagggatattcgggc ctgtctgtaaaggttgtgaattccaccacagggcctggtgaacacctgcggaatgctcta tggcacacaggaaacacccctggccaggtgcgcaccctgtggcatgaccctcgtcacata ggctggaaggatttcactgcttacagatggcgtctcagccacagaccaaagacaggttac atcagagtggtgatgtatgaaggaaagaaaatcatggccgactcaggacccatctatgat aaaacctacgctggtggtagactaggcctgtttgtcttctctcaagaaatggtgttcttc tcagacatgaaatatgaatgtcgagattcctaa

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