Phodopus roborovskii (desert hamster): 127234266
Help
Entry
127234266 CDS
T08852
Symbol
Ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
prob03041
]
127234266 (Ythdc2)
Enzymes [BR:
prob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127234266 (Ythdc2)
Spliceosome [BR:
prob03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127234266 (Ythdc2)
BRITE hierarchy
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
Ank_2
HA2_N
AAA_19
nSTAND3
Ank
AAA_22
ATPase
PhoH
AAA_7
AAA_16
UvrD-helicase
Ank_4
AAA_29
T2SSE
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
127234266
NCBI-ProteinID:
XP_051057113
LinkDB
All DBs
Position
Unknown
AA seq
1433 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGTGGGGGPASCGPGGGGRAKGLKDIRIDEEVKIAVNIALERFR
YGDQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTC
NLTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQV
PVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKN
GIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLL
RTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFI
RYFGSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSA
QENTFKPESQRQRAIASVSEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIW
LHKDVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQLISMGANVHSKA
SNGWMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYHH
SFDDEKVDLDLIMHLLYNICHSCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQ
VFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDAL
NFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELC
LHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPV
EPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDH
MALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGD
IRDVNTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKI
PPANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVVVFCGPARLASNALQEP
SSFRADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLSLQLRQKWHSLFLRR
MRAPSKPWSQVDEATIRAIIAVVSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNN
SRKSSADTEFADGSTAAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVKSTD
SSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNE
RKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKE
SLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEELLQLWERLPLGEKSPAD
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctcgccgcgtcctccggctcctggcggaggcggcaccgga
ggcggcggcggcccggcttcgtgtggtcccggaggcggtggccgggccaaggggctcaaa
gacattcgtatcgacgaggaggtcaagatcgccgtcaacatcgccctggagcgcttccga
tatggggaccagagagaaatggaatttccttcttctttgaccagtacggagagagccttt
atccatcgactgagtcagtcccttggtttagtttctaaaagtaaaggaaagggagcaaat
agatacctaactgtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgt
aatttgactcataatacaaaacatgccgttaggagcctaattcagagatttcctgtcacc
aataaagagcgaactgaacttctacctaaaacagaaagaggaaatgtgtttgcggttgaa
gctgaaaaccgagaaatgagcaaaacaagtgggcgactcaacaatggcattcctcaagtc
cctgtgaaaaggggagaatctgaatttgattcattcaggcaatctttaccagtttttgag
aaacaagaagaaattgttaaaataataaaagaaaataaagtagttttgattgtaggagaa
actggctctggaaagaccacacagattcctcagttcctattagatgactgctttaaaaat
ggcatcccctgccgaatattttgtactcaaccaagacgattagctgctattgctgtggct
gaaagagttgctgcagagagaagagaaagaattggccaaacaattggttatcagatccga
ctagaaagcagggtttctccaaagacacttctgacattttgcactaatggggtattgctt
cgtacattgatggcaggcgatagtacattgtcaactgtgacccatgtcattgtggatgaa
gtgcacgaaagggatcgattcagtgattttttacttacaaagttaagagatttgttgcaa
aaacaccccactttgaaattaatcctttctagtgctgccttggatgtgaacctcttcatc
agatattttggaagttgtccagtgatatatatacaggggagaccatttgaagtaaaagaa
atgtttctggaagatattttaagaactactggctataccaacaaagaaatgttaaagtac
aaaaaggaaaagcaacgagaggagaaacagcagaccacactcacagaatggtactcagct
caagagaatacattcaagcctgaatctcagagacagcgggctattgctagtgtgtctgaa
gagtatgatttattggatgatggaggtgatgctgtattcagtcagctgacagaaaaagat
gtgaattgccttgaaccatggttaatcaaggaaatggatgcttgcctttctgacatatgg
ctgcataaagatgttgatgcctttgctcaggtctttcaccttattttaactgaaaatgtt
agtgttgattataggcatagtgagaccagtgcaacagctctgatggttgctgcaggacgg
ggttttacaagccaagtagagcagttaattagtatgggagccaatgtccacagtaaagca
tcaaatggctggatggctttagattgggctaagcactttggacagactgaaattgtggat
cttctagaatcttatagtgcttcattggaatttggaaatctagatgaaagttctttggtg
caaacaaatggaaatgacctcagtgcagaagacagagagctgctgaaagcttaccatcat
agttttgatgatgaaaaagtagacttagatttgatcatgcatcttctatacaatatctgc
catagctgtgatgctggtgcaatattaatttttctacctggatatgatgaaattgttggt
ttgagggatcgtatcctgtttgatgacaagcggtttgctgacaatacacatagatatcaa
gtctttatgcttcattcaaatatgcagacatctgatcaaaagaaggtattaaaaaatcca
cctgcaggtgtccgaaaaataattctttccaccaatattgctgaaacaagtatcactgtc
aatgatgttgtgtttgttattgattctggtaaagtgaaagagaaatcctttgatgcacta
aattttgttacaatgttaaaaatggtatggatttccaaagctagtgccatacagcggaaa
ggcagagctggaagatgtagacctggaatttgtttccgcctctttagtagactccgattt
cagaatatgctggaatttcagactccagaactcttgagaatgccgttgcaggagctttgt
ttacatactaagctgttagccccagttaattgtaccattgccgacttccttatgaaagct
ccagaaccgcctccagctttaattgtaagaaatgctgttcagatgcttaagacaatagat
gcaatggatgcgtgggaagatctgactgagcttgggtatcatttggctgatttgccagta
gaaccacatcttggtaaaatggtcctgtgtgctgttgttttaaagtgtctggaccccatc
cttacaattgcctgcactctagcttatcgcgacccttttgtactgcctacccaggcctct
caaaagcgtgcagctatgctttgtaggaagcgtttcactgcggggactttcagtgaccac
atggcacttctcagagcattccaggcatggcagaaagcacgaagtgatggctgggagcga
gccttttgtgaaaagaattttctctcacaagccacgatggaaatcattataggcatgaga
acacagttgcttggtcagcttagagcatcaggttttgttagagcacgaggtggtggtgac
attcgagatgttaacacaaactccgagaactgggccgttgttaaagctgcattggtagca
ggcatgtatcctaatttagtccatgtggacagagagaatgtagtattgacagggccaaag
gaaaaaaaagtacgatttcatcccacttcagttctcagtcagcctcaatataaaaagatt
cctccagccaatggtcaggctgcagcgattcaggcattacccacagattggcttatttat
gatgaaatgaccagagcccatagaattgctaatatcaggtgttgttcagcagtgacacct
gttactgttgtggtattctgtggaccagcgaggctggcaagtaatgctcttcaggaacct
tcatcctttagagcggatggcattcccaatgatagtagtgacagtgaaatggaggacaga
actactgctaatttggctgctttgaaacttgatgagtggcttaatttcaaactagagcca
gaggctgccagtttatcgctgcagctgagacagaagtggcatagcttgtttttacgccga
atgagagctccatctaaaccttggtctcaagttgatgaagctaccatccgagcaattata
gctgttgtaagcactgaagagcagtctgcaggcttacagcaaccatctggaattggccag
aggccaagacctatgtcttcagaagaacttcctttggcttcctcttggagatccaataat
agtaggaaaagttcagctgacaccgagtttgctgatggatccactgctgcagaaagagta
ctgatgaaatctccatctccagccttacatccacctcagaagtacaaagacagaggaatt
ttacatcctaaacggagcactgatgaccgatcagatcaatcatctgtgaaatctacagac
agcagcagttacccaagtccttgtgctagtccctctcctccgtcctcagggaagggctca
aaatctccttcaccaagaccaaacatgcctattcgttacttcataatgaagagtagcaat
ctgagaaaccttgaaatttctcaacagaagggtatctggtctacaacccctagtaatgag
cggaagctaaaccgagccttttgggagagcagcatggtttacttggtattttctgttcaa
ggatctggacatttccagggattctctaggatgtcttctgagatcggaagggagaagagc
caggactgggggtcagctggactaggtggagtatttaaagtggagtggatacgcaaagaa
agcctaccctttcagtttgcacaccatttgctcaatccttggaatgacaacaagaaagta
cagataagcagagatgggcaggagctagagcctcaggttggtgaagagttgctccagtta
tgggaacgccttccgttgggagaaaaatccccagctgattga
DBGET
integrated database retrieval system
