Pyrgilauda ruficollis (rufous-necked snowfinch): 121355894
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Entry
121355894 CDS
T07608
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04510
Focal adhesion
pruf04512
ECM-receptor interaction
pruf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121355894 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121355894 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121355894 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pruf04147
]
121355894 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
pruf00536
]
121355894 (COL6A1)
Exosome [BR:
pruf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121355894 (COL6A1)
Glycosaminoglycan binding proteins [BR:
pruf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121355894 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
121355894 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
vWA-TerF-like
DUF5507
Motif
Other DBs
NCBI-GeneID:
121355894
NCBI-ProteinID:
XP_041327658
LinkDB
All DBs
Position
Unknown
AA seq
1023 aa
AA seq
DB search
MRLRDFLLTLLLPAGFLWWGSCAQRPEIITQVSSTEDCPVDLFFVLDTSESVALRVKPFG
DLVTQVKDFTNRFIDKLTQRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQNELKNR
VSSVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTREIDVEETINTIIDM
IKLNTEQSCCSFECQPPRGPPGPPGDPGHEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGRKGEAGYPGLPGCKGSPGFDGAQGPP
GPKGDPGAFGPKGAKGEPGNDGKPGRQGVPGNPGEKGVPGNRGEPGPAGETGDEGALGED
GPPGERGSNGERGPPGSPGDRGLRGQPGQPGPPGDQGREGPLGPPGDQGEPGPSGPKGYR
GDDGPPGSEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQPGDRGNPGING
TKGYVGPKGDEGEAGDPGNDNLTPGPSGIKGAKGHRGREGPPGPPGPVGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTGEALQFTKDNLLRRF
TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTGSADITLLVDSSTSVG
SKNFETTKKFVKRLAGRFLEASKPTDDSVRISVVQYSGRNQQKVEAQFLYNYTVIANAID
NMEFMNDATDVNSALQFITELYRRSARTAAKKRVLVFSDGHSQGITARAIERAVQDAQKA
DIEIYVLAVGSQANEPNIRVLVTGKSADYDVAYGERHLFRVPDYTSLLRGVFYQTVSRKI
AVD
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcgagactttctgctcactctgctgctcccggccggcttcctgtggtggggc
tcatgtgctcagcgcccagaaatcatcacccaagtctcaagcacagaagactgccctgtg
gacctgttcttcgtcctggacacctcagagagtgttgccctgagggtgaaaccctttggg
gacctggttacccaagtgaaagatttcaccaaccggttcattgataagctcacccagagg
tactaccgctgcgaccgcaacctggtgtggaacgcaggagcgctgcactacagcgatgag
gtggtgctcatcaagagcctcacaccgatgcccagtgggcagaacgagctgaagaaccgt
gtgtcatctgtcaactatatcgggaagggcacctacaccgactgcgccataaagcgaggc
atcgaggagctgctcatcggtggttcccatcacaaggagaataaatacctgattgtggtg
actgatggacatcccttggaaggttacaaggagccctgtggaggcctggatgatgctgcc
aatgaagccaaactcctggggatcaaagtgttctctgttgccatctcccccaaccacttg
gaccagcggctgaacatcattgccacagaccacgcctaccgccgcaatttcactgccacc
agcctgaaacccacccgggagattgatgtggaggagaccatcaacaccatcatcgacatg
attaaacttaacacggagcaatcgtgctgctcctttgagtgccagcctcccagagggccc
cccggacctcctggcgaccctggccatgagggagaacgcggcaagccaggtcttcccggc
cagaaaggagaggctggggacccaggcaggccaggagacatgggacctgttggctaccaa
ggaatgaagggtgacaaaggaagccgaggagaaaagggctcaagaggagccaaaggagcc
aagggtgagaaaggcagacgtggaatcgatggcattgatggcaggaagggtgaagctgga
taccctggattacctggctgcaaaggctcacccggattcgacggagctcaaggcccacct
ggaccgaagggagatcctggtgcttttggacccaagggagcaaagggggagcctgggaac
gatggaaagcctggccgacagggggttcctggcaaccctggagagaagggagttcctggg
aaccggggtgagcctggaccagcaggagagacaggtgacgagggtgctctaggtgaggat
ggtcctcctggagaacggggcagcaatggagagagaggacccccaggctcgccgggtgac
cgtgggctgagaggacagccgggacagccaggaccacctggagaccaagggcgggaagga
cccctcggtccacctggcgatcagggtgagcctggaccttcaggacccaaaggctacagg
ggagatgatggcccccccggcagtgagggcccaaagggattgcctggagcacctgggctg
cctggggaccctgggctgatgggagaaaggggggaggatggtcctcctgggaatggcaca
attggattcacaggtgccccagggcagccaggagacagaggcaaccctggcattaacgga
acaaaaggctatgttggacctaaaggtgatgaaggggaagctggtgaccctggcaatgat
aacctgacccctgggcccagtggcatcaaaggagcaaagggccacaggggacgtgaaggt
cccccgggaccaccaggacccgtggggcctccaggaccagatgaatgtgaaatcttggac
atcatcatgaagatgtgctcttgctgcgagtgcacctgtggtcctgtcgacctcctgttt
gtgttggacagctcagaaagcattggcctgcagaatttccagattgccaaggacttcatc
atcaaagtcatcgaccgcctgagcaaggatgagcgggtcaagtttgaagctggggagtcc
cgtgtgggcgttgtgcagtacagccatgacaacacgcaggagctggtggccatgggggat
gccaacatcgacaacatcggagcgctcaagcaggcagtcaagaacctgcagtggatcgct
gggggcacctatactggggaggccctgcagttcaccaaggacaacctgctgcggaggttc
acatccgacaagcgcgtggccatcgtcatcacagatgggcgctccgacaccctgcgggac
cccaccccgctcaactccctgtgcgatgtcaccccggtggtttcccttgggatcggtgac
attttccggaaccctccaaatccagatcacctgaatgacattgcttgtttaagcagacca
accaggccaggactgtccattcaaagggacaactatgccgagctcctggatgacaccttc
ttgcagaacatcacctcatatgtctgccaagagaaaaaatgtcctgactacacctgccca
atcaccttcaccgggtcagcagacatcactctgctggtggacagctccaccagcgtgggg
agcaagaactttgagaccaccaagaagttcgtgaagcggctggcggggcggttcttggag
gccagcaagcccactgacgactctgtgcgcatctcggtggtgcagtacagcggccggaac
cagcagaaagtggaagctcagttcctgtacaactacacggtcattgccaatgccatcgac
aacatggagttcatgaatgatgccacggacgtgaactctgctctgcagttcatcacagag
ctgtaccggcgctctgcccgcaccgcggccaagaagagggtgctggtgttttctgacgga
cactcccaagggatcactgccagggccattgagagggctgtgcaggatgcacagaaggct
gacattgagatctacgtgctggcagtgggaagccaagccaatgagcccaacatccgtgtc
ctggtcacggggaagagcgcagattacgatgtggcttacggggagcggcatcttttccgt
gtgcctgactacacctctctgctgcgtggtgtcttctaccaaactgtgtccaggaagata
gctgttgactga
DBGET
integrated database retrieval system
