Pyrgilauda ruficollis (rufous-necked snowfinch): 121362555
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Entry
121362555 CDS
T07608
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pruf03041
]
121362555 (YTHDC2)
Enzymes [BR:
pruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121362555 (YTHDC2)
Spliceosome [BR:
pruf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121362555 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
AAA_19
HA2_N
nSTAND3
Ank_2
ATPase
Ank
AAA_22
Ank_4
PhoH
AAA_23
AAA_7
ResIII
AAA_16
T2SSE
AAA_30
SRP54
AAA_29
Motif
Other DBs
NCBI-GeneID:
121362555
NCBI-ProteinID:
XP_041340081
LinkDB
All DBs
Position
Unknown
AA seq
1414 aa
AA seq
DB search
MSRPRNVPPRQHGAGTAGSGAPAAPGRGRGGKGLRDIRVDEEVEIAVKLALERFRYGEDT
EMEFPSSFTRTERAFVHRLCHSLGLISKSKGKGANRYLTVRKKDGSELKRAVMTCALTPG
TKHAVCTLIQNFPVTNKERTELLPKTEQGNAYAVESENKEVKTSGRLSDGIPQVPVKRGE
SELDSFRQSLPVFEKQEEIIKIIKDHKVVLIVGETGSGKTTQIPQFILDDCHKNGTPCRI
FCTQPRRLAALAVAERVAAERREKVGQTVGYQIRLESRVSPKTLVTFCTNGILLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQSQANLKLIVSSAALDADLFIRYFGCC
PVIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQQSTLTEWCSARENNTK
LEPERPRFVPRAEECSLLGDDGNTVFNQLTEKDANCLELWLIKEMDSCLSDIWLHKDIDA
FAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGANIHCKSSNGWMAV
DWAKHFGQTEVVDLLESYGASAGFGNLDESSLVRTSGSDLSAEDRELLTAYHHSFDDEKV
DLDLIMHLLYNICHSCETGAILIFLPGYDEIVSLRDRILFDDKRFADNVHRYQVFMLHSN
MQTLDQKKVLKSPPPGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSCVTMLK
MVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFENMLEFQTPELLRMPLQELCLHTKLLA
PINCPVVDFLMKAPDPPPALIVKNALQMLKTIDAMDPWEDLTELGYHLTELPVEPHLGKM
VLCAVVLKCLDPVLTIACALAYRDPFVLPTLASQKRAAMLCRKRFTAGTFSDHMVLLRAF
QAWQKARSDGWERTFCEKNFLSQATMQIIVGMRTQLLGQLRASGFVRARGGADIRDVNAN
SENWAVVKAALVAGMYPNLVHVDRESLVLTAPKEKKVRFHPTSVLSQPQYKKIPPVNGQT
AAVQALPTDWLIYDEMTRAHRIANIRCCSVVTPITVALFCGPARLPSNALQASSSRQGDS
ESSDSEMEDRTTSNVSLLKVDEWLHLKLDSEAAGLLLQLRQKWHSLFLRRMRTPSKSWSQ
VDEATVRAVVAVLTAEEQSAGLQQPSGIGQRPRPVVSEDCLVSSTWRSTDTRRSTAETEF
SDSSNAEKVPVRSTRPVLHQPKNYKRKNIFHSKRASDDRSDRSSVKSADSFPSPCASPSS
PMSGKASKSPSPRQNMPIRYFIMKSSNLQNIEISQQKGIWSTTPSNERKLNGAFRESSMV
YLIFSVQGSGHFQGFGRMCSSIGCEKSQDWGSAGFGGVFKVEWIRKESVPFQFAHHLLNP
WNDNKKVQISRDGQELEPQAGEQLVQLWDHIPLE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcccaggaacgtcccgccgcggcagcacggcgcgggcaccgcgggctcgggc
gctcccgccgcgccgggccgcggccgaggcggcaaaggtctgagggatatccgcgtggac
gaggaggtggagatcgcggtgaagctcgctctggagcggttccgctatggcgaggacacg
gaaatggaattcccgtcttctttcactagaaccgaaagagcatttgttcaccggctctgt
cattctcttggactgatatcgaagagtaaaggaaaaggagcaaatcgatacctaactgta
agaaaaaaggatggatcagaactaaaacgtgcagtaatgacttgtgccttaactcctggt
acaaaacacgctgtttgtactttaattcaaaattttcctgtcacaaataaagaacgaaca
gaacttctgccaaagacagaacaaggaaatgcatatgctgttgaatctgaaaacaaagaa
gtgaagacaagtggacgacttagtgatggtatcccccaggttcctgttaaaagaggggaa
tccgagcttgattccttcaggcaatcactaccagtttttgaaaaacaggaagaaattatt
aaaataataaaggaccataaagttgttttgattgtaggagagactggatctggaaaaact
actcaaatcccccagtttattcttgatgactgtcacaaaaatggaactccctgccgtata
ttttgcactcagccaagacgtttggcagcacttgctgtggctgaaagagtggcagcagaa
agaagagaaaaggttggccagacagttggttatcagatccggttagaaagcagggtttct
ccaaagacactggtaaccttttgcactaatggcatactgcttcgcacattgatggcagga
gacagcaccctatcaaccgtgacacatgttattgtggatgaagtacatgagagggatagg
tttagtgacttcttgctaataaaactgagagatgtgttgcaaagccaagctaatttaaaa
ctaattgtttctagtgctgctctagatgcagacctctttattaggtattttggatgttgc
ccagtaatacacatccaaggaagaccttttgaagttaaagagatgtttttggaggacatt
ttacgaagtactgggtatacaaacaaagagatggtaaagtacaaaaaagagaagcagcaa
gaagaaaaacagcaaagcactcttactgagtggtgttctgctcgagaaaataatactaag
ctggaacctgagagaccaagatttgtcccaagggctgaagagtgtagtcttttgggtgat
gacggtaacacagtatttaatcaactgactgaaaaagatgctaattgccttgaactatgg
ttaataaaagaaatggattcttgtctttctgacatctggttgcataaagatatcgatgcc
tttgctcaggtgttccatctcattttaactgaaaatgtcagtgttgattataggcacagt
gaaaccagtgcgactgcactaatgattgcttcagggagaggctttttgagtcaagtagag
cagctgatcagtatgggagcaaatatccactgcaaatcatctaatggctggatggctgtg
gactgggctaagcactttggacagacagaggttgttgacctgttggagtcctacggtgct
tcagcaggatttggaaatctggatgaaagttccctggtccgaacaagtggtagtgacctt
agtgcagaggacagagaactcttgacggcttatcatcacagttttgatgatgaaaaagtg
gatcttgacctcattatgcacttgctttataacatctgtcatagttgtgagactggagca
attttaatatttcttcctggatatgatgagatagttagcctgagggatcgtattcttttt
gatgacaagagatttgcggacaatgtgcacagataccaggttttcatgcttcattcaaat
atgcagactttggatcagaagaaagtgcttaaaagtccacctcctggtgtgcgcaaaata
attctttctacaaatatagcagaaaccagcataacagtcaatgatgttgtatttgttatt
gactcaggcaaggtgaaagagaagtcttttgatgcactgagttgtgttacaatgctgaag
atggtgtggatttcaaaagccagtgctatccagagaaaaggcagggctggacgctgtcag
cctggagtctgttttcgcctcttcagcaggctccgatttgagaatatgttggaatttcag
actccagaacttctaagaatgccacttcaggagctttgtttgcacacaaaacttctggct
ccaattaattgtccagttgtagactttcttatgaaagctcctgatcctccaccagcttta
attgtgaaaaatgctctgcaaatgctcaagactatagatgccatggacccttgggaagat
ctgactgagcttggttatcatctcactgaattgccagtggagccccacctcggtaaaatg
gtgttgtgcgccgttgttttgaagtgcctggatcctgttctcaccattgcctgtgctctg
gcctaccgagaccccttcgtgctgcccacgctggcctctcaaaagcgggcagccatgctg
tgcaggaagcgttttactgcaggaaccttcagcgaccacatggtgcttctcagggctttt
caggcgtggcagaaggcacgcagtgatggctgggagagaaccttctgtgaaaagaacttc
ctgtctcaagccacaatgcaaatcatcgtaggaatgagaacacagttgcttggccagctt
agagcctcaggttttgttagagccagaggaggagctgatattagagatgttaatgctaac
tctgaaaactgggctgtagttaaagctgccttagtggccgggatgtatcccaatcttgtg
catgtagaccgagagagcctggttttaactgcaccaaaggagaagaaagtgcgatttcat
ccaacctctgttcttagtcaacctcagtataaaaagattcccccagtgaatggccaaact
gcagctgttcaggcactccctacagactggctgatatacgatgaaatgacgagagctcac
aggatagcaaacatcaggtgctgttctgttgtaacacccatcactgtggctctcttctgt
ggaccagctaggttaccaagtaatgctttacaggcatcttcatcccgtcaaggagacagt
gagagcagtgacagtgagatggaggacagaacaacttctaatgtatcactactgaaggta
gatgaatggcttcacctcaaactggactctgaagctgctggtttgctgttgcaactcagg
cagaagtggcatagcttatttctgcgtcgcatgcgaactccttctaaatcgtggtctcaa
gttgatgaagcaactgtaagagcagttgtagctgttttaactgctgaagaacagtctgca
ggtttgcagcagccttcaggaattggtcagagaccaagacctgtggtttccgaagattgt
cttgtatcatctacatggaggtcaactgacaccaggagaagtacagcagaaactgagttc
tctgactcctctaatgctgaaaaagttcctgtgaggtctacacgccccgtacttcatcag
ccaaagaattacaaacgaaaaaatatttttcactccaaacgagcttcagatgacaggtca
gatcgatcatcagtgaagtctgcagacagcttccctagcccctgtgctagtccatcttct
ccaatgtctggaaaggcttccaaatcaccttcaccaagacaaaatatgccaattcggtac
tttataatgaaaagtagcaacttgcagaacattgagatttctcagcagaagggtatatgg
tccactacgccaagtaatgaacgaaaactgaatggagcctttcgggaaagcagcatggtt
tacttaatattttctgttcaggggtctggacacttccagggttttggtagaatgtgttca
tcaatagggtgtgagaaaagtcaggactggggatctgctggatttggaggtgtatttaag
gtggagtggatccgaaaagaaagcgttccttttcagtttgcacatcatttgctcaaccct
tggaatgacaataagaaagtacaaataagcagagatggccaggagctggaaccacaagct
ggagagcagttggtgcagctttgggaccatattcctttggaatga
DBGET
integrated database retrieval system
