Psychrobacter sp. PRwf-1: PsycPRwf_0473
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Entry
PsycPRwf_0473 CDS
T00541
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prw
Psychrobacter sp. PRwf-1
Pathway
prw03030
DNA replication
prw03410
Base excision repair
prw03420
Nucleotide excision repair
prw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PsycPRwf_0473
03410 Base excision repair
PsycPRwf_0473
03420 Nucleotide excision repair
PsycPRwf_0473
03430 Mismatch repair
PsycPRwf_0473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prw03032
]
PsycPRwf_0473
03400 DNA repair and recombination proteins [BR:
prw03400
]
PsycPRwf_0473
Enzymes [BR:
prw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PsycPRwf_0473
DNA replication proteins [BR:
prw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PsycPRwf_0473
DNA repair and recombination proteins [BR:
prw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PsycPRwf_0473
NER (nucleotide excision repair)
GGR (global genome repair) factors
PsycPRwf_0473
MMR (mismatch excision repair)
DNA ligase
PsycPRwf_0473
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PsycPRwf_0473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
PTCB-BRCT
HHH
5_3_exonuc
DUF3701
Motif
Other DBs
NCBI-ProteinID:
ABQ93428
UniProt:
A5WCN7
LinkDB
All DBs
Position
561020..563080
Genome browser
AA seq
686 aa
AA seq
DB search
MTQNTADTHASAQAQEVIAKMRTLIAQVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEE
RYPELTQPDSPTASVGDNPLPSFSQVQHDIAMLSLGNIFNYQDLQEFMRRVNDRLSDADR
NPEYEIEMKLDGLAVSLKYHNGQFVRGVTRGDGQMGEDITQNVKTINNIPLVIEAAQDID
VLEVRGEVLMPKAGFKRLNRLAQENGDKTFANPRNAAAGSLRQLDPAVAASRPLAFYAYS
VNQGLPEAITLQSAALTWLKQLGFTVSDFERVKTAQQVQDYYESMIQKRADLAFEIDGMV
IKVDDLTLQSQLGALSREPRWATAYKFPAETVMTTLNSIEWQVGRTGQLTPVGKLEPVQV
GGVTVSNVTLHNFGEIQRLDVRAGDTVSVHRAGDVIPKVTRVWHDLRPEGTSAVTLPTHC
PVCDSPVVLPEGEALARCTGELFCPAQQQEALIHFVSRKAMDIDGLGERWLISFFEHGIV
KTVADIYHLNEHADELVTLEKLGEKSVSNMLRAIEESKKTTLARFIYALGIRGVGETTAQ
NLAQYFGDLPELMGASIDALEAVPDVGHITAELIYNFFRAEHNIEVINALQQAGVYWDKV
EQQALDNLPLEGQTWVITGTLVASGMSRDDAKAHLQALGAKVSGSVSAKTSALLAGEKAG
SKLTKAQSLGVRVVLEDEFLKMIGAS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaaacacagcagacactcatgcctcagcacaagctcaagaggtcattgcaaaa
atgcgtaccttgatcgcacaggtgcgtaaacacaacaatgcttattatgtgatggatgag
ccgaccatcagtgacaatgaatatgaccagttgcgcttaagtctcattgagcttgaggag
cgttatcctgagttaactcagcccgacagtccgacggctagcgtgggcgacaatcctctg
ccgtcattctcccaagtgcagcatgacattgctatgctgtcactgggtaatatttttaat
tatcaagacttacaagagtttatgcgccgggtcaatgaccgtctaagtgatgctgatcga
aatcctgagtatgagattgagatgaaattagatggtttggctgtttcattaaaatatcat
aacggacaatttgtgcgcggcgtgactcgcggcgatggtcaaatgggcgaggacattacc
caaaacgtgaagaccatcaataacattccactggtgatagaagcggcgcaagatattgat
gtgcttgaggtgcggggcgaggtactgatgccaaaagcaggctttaagcgcttaaaccgt
ttggcacaagaaaatggtgataaaacctttgccaacccccgtaacgcagcagcaggtagt
ctacgtcaattagacccagccgtggctgccagtcgtcctttggctttttatgcgtattcg
gtgaaccaaggcttgcctgaagcgattactttgcaatcggcggctttgacctggcttaag
cagttaggctttactgttagtgactttgaacgggtaaaaacagcccagcaagttcaagac
tactatgagtcgatgatacaaaaacgggcagatttagcctttgaaattgatgggatggtt
attaaggttgatgacttaacgctacaaagtcaactgggcgcgttatcacgtgaaccgcgc
tgggccaccgcctataagttccctgctgaaacggtgatgaccacactcaatagtattgaa
tggcaagtggggcgtaccggtcagctgactccagtgggcaagcttgagccagtgcaagtg
ggcggtgtgacggtcagtaacgtgaccttgcacaacttcggggaaatccagcgccttgat
gtgcgtgcaggtgataccgtcagcgtccaccgagcgggcgatgtgatacctaaagtgact
cgggtatggcatgatttgcgccctgagggtacctcggcggtgacgctgccaacccactgt
cctgtgtgcgactcacctgtggtattgccagagggtgaagccttggcacgctgcaccggt
gagctgttttgtcctgcgcagcagcaagaggcactaattcactttgtatcacgtaaagcg
atggatattgatgggctcggtgagcgctggttaatcagtttctttgagcatggcatcgtc
aaaactgtggccgatatttatcatttaaatgagcatgccgatgagctggttactctagaa
aaattgggcgagaagtccgttagcaatatgttgcgcgccattgaagagagtaaaaaaacc
acactggcgcgctttatctatgcgctaggcattcgcggtgtgggagagaccacagcacag
aatctggcacaatattttggtgatttgcctgaattgatgggcgccagcattgacgcctta
gaggccgtacctgacgtgggccatattaccgctgagcttatttataatttcttccgtgct
gagcataacatcgaagtcattaacgcattgcagcaagctggcgtgtattgggataaggta
gagcagcaggccttagacaatctaccccttgagggccaaacgtgggtgataacaggtacc
ttggtcgccagcggtatgtcacgcgatgatgccaaagcgcatctgcaagctttgggtgca
aaggtctcaggcagcgtatcggccaaaacctcggcattattggccggtgaaaaggcaggc
tctaagttgaccaaagcgcagagtctgggagtgcgtgtggtgttagaggatgagttctta
aagatgattggggcgtcatga
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