Paenibacillus sabinae: PSAB_04970
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Entry
PSAB_04970 CDS
T03064
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psab
Paenibacillus sabinae
Pathway
psab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSAB_04970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psab03400
]
PSAB_04970
Enzymes [BR:
psab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSAB_04970
DNA repair and recombination proteins [BR:
psab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSAB_04970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Peripla_BP_1
Motif
Other DBs
NCBI-ProteinID:
AHV95930
UniProt:
X4ZGT4
LinkDB
All DBs
Position
complement(1140637..1141581)
Genome browser
AA seq
314 aa
AA seq
DB search
MKLTPIVPFEPVIADRPPAGDQWIAQIKWDGVRMLSYYDGSSTELINRRQNYRTKQYPEI
AAAESYCKAGSAILDGEVIALCEGKPSFHEVMRRDSLRKESAIAATVRQIPILYMVFDIL
YCNGVWTLDRPFLERRNLLEEMLRPHPHVQAVPSYNDPTALLAAARAQGLEGIVCKDVNS
VYSPGGKDKRWLKCKIISDLNAVAGGVTFRDGTVNAVLLGLYGDDGRLHYIGHAGTGKMT
VRDWRELTALSHRLAAEDMPFASLPQRVKGAFWIRPELVFKIHFLEWTDSGTLRHPSIQA
RLNLSPSECRLPKR
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgacgcccatcgttccgtttgagccggtcatcgcagaccggccgcctgccgga
gaccagtggatcgcccagattaaatgggacggcgtccgcatgctttcctattacgacgga
agctccaccgagctgattaaccggcgccaaaattatcggaccaagcaatacccggaaatc
gccgcagcggagagctactgtaaagcgggttccgccatcctggacggcgaggttatcgcg
ctttgcgaaggaaagccctcttttcacgaagtgatgcgccgcgacagcctaaggaaagaa
tcggccatcgctgcgacggtccggcaaattcccattttgtatatggtatttgatatttta
tactgcaacggggtgtggacactggatcggccgttcttggagcgccggaacctacttgag
gaaatgcttcggccccatccgcatgtgcaggccgtgccgagctacaacgatcccaccgcg
ctgctcgcggccgctcgcgcacaagggcttgaaggcattgtttgcaaggatgtgaacagc
gtctactcgccgggcgggaaagacaagcgctggctcaaatgcaaaatcatttccgatctc
aatgccgtcgcgggaggcgtcaccttccgggacggcacggtcaatgccgtgctgcttggg
ctatatggcgatgacgggcgtctgcattatatcggacatgcaggcacagggaaaatgacg
gtaagggactggcgggagttaaccgcactgtcacaccgtctcgctgcagaggacatgccg
ttcgcttcgcttccgcagcgggtcaaaggagccttctggattcgtccggagctggtattc
aagatccattttctggagtggaccgattccggcacgctgcgccaccccagcattcaagcc
aggcttaatctctctccatcggagtgccggctcccgaagcgctaa
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