Pseudomonas syringae pv. syringae B728a: Psyr_3245
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Entry
Psyr_3245 CDS
T00246
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Psyr_3245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psb03400
]
Psyr_3245
Enzymes [BR:
psb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Psyr_3245
DNA repair and recombination proteins [BR:
psb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Psyr_3245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AAY38277
UniProt:
Q4ZRE5
LinkDB
All DBs
Position
complement(3886134..3888734)
Genome browser
AA seq
866 aa
AA seq
DB search
MAKPASEYTRKRNFAITSEPAESKRKGKGKSQPGALGFVIQKHDARNLHYDFRLELDGTL
KSWAVPKGPSLDPTQKRLAVHVEDHPLDYAGFEGSIPQGQYGGGDVIVWDRGVWQPHGDP
QKTYEEGKLKFTLVGEKLSGDWALVRTRLKGSGSKEQWLLIKEKDDVARPAAEYDITHEQ
PQSVISGAHVGKQRGTSKKSGASAAKAKAATPAAAKASMPAAKPARRKAKSAFLDTLAPQ
LATLVEAPPAGDWLYEIKFDGYRMLTRIQGDDVRLFTRNGHDWTERLPELVKALKGMKLR
DSWFDGEVVVLDEQGLPDFQGLQNAFDAGNSKDILYYLFDMPFLSAEDLREVPLEQRRDA
LKQVLDAQKSRLLRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVSKRNADWIKLKC
RLRQEFVVVGYTAPQGSRSAFGALLLAVNAGEDGLIYAGRVGTGFTEVSLEQLHKQLKKL
QRKDSPLAKKLSASQARGVQWVAPQLVCEAEFAQWTREGIVRQAAFVGLRSDKPAKDVVR
EDAQPAKVASQPPTTTAAPKARKKAAQGKVDVAGTGISHPDRVIDSKSGTSKIELAQFYQ
SIADWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEID
SVPALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEE
LGLEAFLKTSGGKGMHIIVPLARQADWDTVKAFAKAIAEFASRQLPERFTATMGPKNRVG
KIFIDYLRNSRGGSTVTAYSVRARPGLPVSVPIALDELAGLKSSAQWDITNLEQRLKRLK
DDPWAGYSNRRKITQRMWKQLGAKRP
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccgccagtgaatacacccgcaagcgcaatttcgccatcacctccgagcct
gcggagagcaagcgtaagggcaaaggcaagtcgcagcctggcgcgctcggtttcgtgatc
cagaagcatgacgcacggaacctgcactacgactttcgactggagctcgatggcacgctc
aagagctgggccgtgcccaaaggtccgagcctggaccccacgcaaaagcgtctggcagtg
catgtcgaagaccatccgctggactacgccggcttcgagggcagtatcccgcaggggcag
tacggtggcggcgatgtgattgtctgggaccggggtgtctggcagccgcacggtgatccg
caaaagacctacgaggaaggcaaactcaagttcaccctggtcggcgagaaactcagcggt
gactgggcgctggtgcgtacccggctcaagggcagcggcagcaaggaacagtggctgctg
atcaaggaaaaggatgacgtcgcgcgacctgctgccgagtacgacatcacccatgagcag
ccgcaaagcgtgatcagtggagctcatgtcggcaagcaacgcggcacctcgaaaaagtcc
ggggccagcgccgccaaagccaaggccgcgacacccgccgcagcaaaagcgtcaatgccc
gctgcaaagccggcgcgcaggaaggcgaaatcggctttcctggacacgcttgcgccgcaa
ctggcgacgctggtggaggcgccgccagccggtgactggctgtatgaaatcaaattcgat
ggctaccgcatgctgactcgtattcagggcgacgatgtgcggctgtttacccgcaacggg
catgactggaccgagcggctgccggaactggtcaaggcgctcaagggcatgaagctgcgc
gacagctggttcgacggcgaagtggtggttctcgatgagcaggggctgcccgacttccag
ggcctgcagaatgcctttgacgcgggcaacagcaaggacattctgtattacctgttcgac
atgccgtttctgagcgcggaggacctgcgtgaagtgccgctcgagcagcgtcgggatgcc
ttgaaacaagttctcgacgcacagaaaagtcgcctgttgcgttactcggatgcctttcag
gcaggccatcaggacattgtcgcgagtgctgcggcaatgggcctggaaggggtgatcggc
aagcgtgccggcagtgcctacgtcagcaagcgcaatgccgactggatcaagctcaaatgt
cgcttgcgacaggaattcgtggtcgtcggctatacggcgccgcagggcagccgatcggcg
ttcggggccttgttgcttgcggtcaatgccggtgaggacgggttgatctatgccgggcgg
gtcggcaccgggttcactgaagtgagccttgagcaactgcataaacagctgaagaagttg
cagcgcaaggattcaccgctggccaaaaagctctccgcgtcccaggcgcgtggcgtgcag
tgggtggcgccgcaactggtctgcgaagccgagttcgcccagtggacccgcgaaggcatc
gtgcgccaggctgcctttgtcgggctgcgtagcgacaagcccgccaaggacgtggtgcgt
gaagacgctcagcctgccaaagtggccagccagcccccaaccacaacggcagcgcccaag
gcacgcaaaaaggccgcgcagggaaaggttgatgtagcgggcaccggcatcagtcatccg
gaccgcgtcatcgacagcaagtccggcaccagcaagatcgaactggcgcagttttaccag
tccatcgccgactggattctgccctacctgaacaagcgtcccgtggctctgctgcgctgt
ccggagggcatcgacggtgagcagtttttccagaagcatgccgaacatctggcgatcccg
cacatcaggcaactggatcgtgccctggaccccgggcatgccgcgctgatggaaatagat
tcggtgccggcactggtcggtgctgcgcaaatgggcgccatcgagctgcatacctggggc
gcgacgcgtgacagaatcgaaacgccggaccatttcgtgctggaccttgatcccgatccg
gcactgccctggcgcagcatgatcgaggccacgcaaatggtgctcgccgtgctggaagaa
ctggggctggaggctttcctcaagaccagcggtggcaagggcatgcacatcattgtgccg
ttggcgcgccaggcagactgggacacggtaaaggcgttcgccaaggccatcgccgagttt
gccagccgtcagctgccggaacgcttcaccgccaccatggggccgaaaaaccgcgtcgga
aaaatcttcatcgattacctgcgcaacagccgcggcggcagcaccgtaaccgcctactca
gtacgcgcccggcccgggttgccggtctcggtgccgatcgcgctggatgagctggcgggt
ctgaagtcgtcggcacagtgggacatcaccaaccttgagcagcgtttgaagcggctcaag
gacgacccgtgggccggttacagcaaccggcgcaaaatcacgcagaggatgtggaagcaa
ctgggtgcgaaacggccttga
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