Stutzerimonas stutzeri CCUG 29243: A458_10100
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Entry
A458_10100 CDS
T02168
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psc
Stutzerimonas stutzeri CCUG 29243
Pathway
psc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A458_10100 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psc03400
]
A458_10100 (ligD)
Enzymes [BR:
psc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A458_10100 (ligD)
DNA repair and recombination proteins [BR:
psc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A458_10100 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
AFM33259
UniProt:
I4CT52
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All DBs
Position
2199231..2201795
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AA seq
854 aa
AA seq
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MALDEYQRMRDFAATPEPSGKARGRSRKVQSLQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPSVRRLAVHVEDHPLEYATFEGSIPAGHYGAGDVIVWDRGVWIPQGDPQEGY
RKGKLKFSLEGEKLAGSWNLVRTHMAGKKEQWFLIKSHDEAAREEGEYDVVTAEPNSVLS
DRTLVPRKRGAAKARVAEAPAKPVKAPARKRASRKKSDAVKLEGAVPAKLPETFKPQLAT
LVDAVPSGDWRYEIKFDGYRMLARIDAGKVALFTRNGHDWTAKMPQQAAALAGLGLESGW
LDGEVVVPNEEGAPDFQALQNAFEAGRSGSILYYLFDVPYLNGMDLRDVPLEQRRAALRE
VLEGSDSELLRFSDDFTEQPDSILESACQMKLEGLIGKRAGSSYTSRRSSSWVKIKCSNR
QEFIIVGYTEPKGTRTGFGALLLGLHDDSGKLLYAGKVGTGFNQATLKSLHKQLKKLEAD
KSPLAKAAPAADVRGAQWLKPELMCEAAYAEMTRQGVVRHSVFHGLRSDKPADAITRERA
KPASRSSKAEQRQTDPIGSGRIKISSPERIIDPSSGITKIEVARFYAQIAPWALPQLRAR
PLALVRAPEGITGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSAEALVGAAQMGT
IELHCWNAVAPELEHPDRFVLDLDPDPALPWKSMLEATQLTQTLLDEIGLTSFLKTSGGK
GIHIVVPLDPVHGWSEVKAFSQAIAKYLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGA
STVAPYSVRAREGLPVSVPIHREELADLKGANLWTVRNLLERLQELGDDDPWADMTRVRQ
TITAQMRERLAMPA
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgacgaataccagcgcatgcgcgattttgccgccacgcccgagccgtcgggt
aaggcgcgcggcaggtcacgcaaggtccagagcctgcagtactgcatccagaagcacgac
gccacgcggttgcattacgactttcgcctggagctggatggcacgctgaagagctgggcg
atccccaaaggccccagccttgacccgagcgtgcgccggctcgcagtgcatgtggaggat
cacccgctggaatatgccacgttcgagggctccattcctgccgggcattacggcgcgggc
gatgtgatcgtctgggatcgcggcgtgtggataccgcaaggtgatccgcaggagggctat
cgcaagggcaagctcaagttcagcctcgagggcgaaaaactcgccggcagctggaatctg
gtgcgcacgcacatggctggcaagaaggagcagtggttcctgatcaagtcccatgacgag
gccgcgcgcgaggagggtgagtacgacgtcgtcaccgccgagccgaacagcgtgctcagc
gatcgcacgctggtcccacgcaaacgcggagcggccaaggctcgcgttgcggaagcgccg
gccaagccagtcaaggcgccggcaagaaagcgagcgtcacgcaagaagagcgacgcggta
aagctggaaggagccgtcccggccaagttgccggagacgttcaagccgcagctggcgacg
ctggtggacgccgtgccgagcggcgactggcgctacgagatcaagttcgacggctaccgc
atgctcgcccgtatcgacgccggcaaggtcgcgctgttcacccgcaacggccatgactgg
acggcgaagatgccgcagcaggcggccgcgcttgccggactcgggcttgaatccggctgg
ctcgacggcgaagtggtggtgccgaacgaggagggcgctccggacttccaggcattgcag
aacgcgttcgaagccggacgcagtggaagcattctctattacctgttcgacgtgccctat
ctgaacggcatggacctgcgggacgtgccgctggaacagcgtcgcgcggcgttgcgtgaa
gtgctggaaggcagcgacagcgaattgctgcgtttctccgacgatttcaccgagcagccg
gacagcattctggaaagcgcctgccagatgaagctcgaaggcctgatcggcaagcgagcg
ggcagctcctatacctccaggcgcagcagcagctgggtcaagatcaagtgcagcaaccgg
caggaattcatcatcgtcggctacaccgagcccaagggcacgcgcaccgggttcggcgcc
ctgttacttgggctgcatgacgacagtggaaagctgctctatgcaggaaaggtcggcact
ggcttcaatcaggccacgctgaaaagcctgcacaagcagttgaagaagctggaagccgac
aaaagtcctttggccaaggcggcacctgctgccgatgtgcgcggcgcgcaatggctcaaa
cccgaactgatgtgcgaggctgcctacgcggagatgacccgccaaggcgtggtccgccat
tcggtgttccatggcctgcgctcggacaaacccgccgacgccattacccgtgagcgggcc
aagcccgccagtcgtagcagcaaagccgagcagcggcagacagaccccatcggcagcggg
cggatcaagatatccagtcccgagcgaatcatcgaccccagcagcgggatcaccaagatc
gaagtggcccgcttctacgcgcagatcgcgccctgggccctgccgcagctgcgagcgcgc
ccgctggccctggtgcgcgccccggagggcatcaccggcgagctgttcttccagaagcac
gccgacaaattggccatcccgcacatcacccaactcgacccggcgctagacccgaagcac
ggtgcgttactggtgatcgacagcgccgaagcgctggtcggcgccgcgcagatgggcacc
atcgagctgcactgctggaacgcggtagcgcccgaactggagcatccggatcgcttcgtg
ctcgacctcgacccggacccggcgctgccctggaagagcatgctcgaagccactcagctg
acccagacgctgctggacgagattggcctgacctcgttcctcaagaccagcgggggcaaa
ggcatccacatcgtcgtaccgctcgatccggtacacggctggagtgaggtgaaggccttc
agtcaggccatcgccaagtacctggcaaagctgctgccgtcgcatttttccgccgtaagc
gggccgaagaaccgggttggacgcatcttcatcgactacctgcgcaacagccgtggcgcc
agtaccgtcgccccctattcggtgcgtgcccgcgagggcctgccggtctccgtgccgatc
caccgcgaagaactggcggacctcaagggcgccaatctctggaccgtacgcaatctgctg
gagcgcctgcaggaactgggcgacgacgatccctgggcggatatgacgcgggtcaggcag
accatcaccgcgcagatgcgcgaacgtctggccatgccggcttaa
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