Mollisia scopiformis: LY89DRAFT_638376
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Entry
LY89DRAFT_638376 CDS
T04865
Name
(RefSeq) ATP-dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
psco
Mollisia scopiformis
Pathway
psco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LY89DRAFT_638376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psco03400
]
LY89DRAFT_638376
Enzymes [BR:
psco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LY89DRAFT_638376
DNA repair and recombination proteins [BR:
psco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
LY89DRAFT_638376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
RNA_ligase
BRCT
RTT107_BRCT_5
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
28821298
NCBI-ProteinID:
XP_018076509
JGI:
638376
UniProt:
A0A194XQ22
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MASQREPDDEAIQDDELQYGHGPMTMEELDDKYGGDEDTPRPRNHSKTPPFSELLVSLFN
PLNDNKKRPTGPKVVAKKGPGSKTVSPHEQRRNIIQQFILRWRSQVGNDFYPALRLILPE
KDRDRPMYGLKEKAIGKLIVKMLKINANGDDAQSLLNWKLPGQTTASRMAGDFAGRCFEV
LSKRAMRQDFGDMRIAEVNELLDRLSAVSKEEDQLPIFSQFYNRMNADELLWLIRIILRQ
MKVGASEKTILEMWHPDGEILFNVSSSLRRVCWDLWDPSIRLDDDRRGIELMSCFQPQLA
QFSQHSIQKMIERMGCTSDNPEFWIEEKLDGERMQLHMKPDPNVKGGRKFAFWSRKGKDY
TYLYGSSLEDQNSSLTRFLKDAFDPGVESIILDGEMITWDPVTRSMVGFGTLKTAAISEQ
RNPYGETGHRPLFRIFDCLYINDKDITGFMLQDRREALERVVKNVDMRLEIHKYQVAATA
AEVETELRKVIEEASEGLVLKNPRSVYRLNSRNDDWMKVKPEYMTEFGESLDCVVIGGYY
GSGHRGGMLSSFLCGLRVDDNAIKAGADPMKCLSFFKVGGGFRAEDYAKVHHKTEGKWRK
WDRNNPPRDLIVLGGNDNQQFERPDEWIKPCDSVVLEVKAASVAASDHYGYQYSLRFPRF
KKLRDDKSWKEALSTYEFVELKSRVEEESKNKALKIDTSRRASKRLKKEVLIAGNNTKIR
TPYAGPQTKAFEGLSFWVMTGKEDQPKKTKAEMEQIIKSNGGKIVQSSTATDSVICIGDK
RVVKVASLIKSGETNIVKPAWVLDALKQVEIDGAERQRFLIPSEPAHMYHMLEEVREHIE
GAVDDYGDSYARDVNVDDLRRLMEDMIHPKDSEFSATEFLSELEERGKGFGEVPGSMFRR
CVARFVPANDETSGIDLEIAKNQFLFAGGTIAGDDEDDSITHYIVTSTDSKLVRDLRKSI
SRGSLRIPRIVSLSWLSDSWKEKTVLDEEQYAIVV
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggctagtcaaagggagccggatgatgaggccatccaagacgatgagcttcagtacggt
catggcccaatgaccatggaagagcttgatgacaagtatggtggtgacgaagatactcca
cggcctcggaatcattccaaaacacctccattctcagagctgctagtatctctcttcaat
cctctcaatgacaacaagaagcgacctactggccccaaagttgttgcaaagaaaggcccc
ggatcaaagaccgtatcgccgcatgagcagcggcgcaacattatccaacagttcatctta
cgatggcgcagtcaggttggcaatgacttttaccccgctcttagactcatcttgcctgag
aaggatcgagacagaccaatgtacggtctcaaagagaaagcgattggcaagttgatcgtc
aagatgctcaagatcaatgccaatggcgatgatgctcaaagtctgctcaattggaagcta
cctggtcagaccactgcaagtcgtatggcaggtgattttgctggaagatgtttcgaggtt
ctatccaaacgagcaatgcgacaagattttggggacatgcgaattgctgaggtgaacgag
cttctcgacagactttcagctgtctcgaaggaggaagaccaattgcctatcttctcgcaa
ttctataacagaatgaatgcagacgaacttctttggctgattcgcatcatccttcggcaa
atgaaggtgggcgcatctgaaaagaccatattagagatgtggcatcccgatggggaaatt
ctcttcaacgtctcttcaagcctgaggcgagtatgctgggacctctgggatccatcaatt
cggcttgatgatgatcggaggggcattgagttgatgtcatgttttcagcctcaactagca
cagttctcacaacattcaatccagaagatgatcgaaagaatgggttgcacctctgacaat
ccggaattctggatcgaagagaaattagatggcgagcgcatgcagctacacatgaaacca
gaccccaatgtcaagggaggacgaaagtttgctttttggtctcgaaagggtaaagactat
acgtatctgtacggaagtagtctcgaagaccaaaattcgtccctaacaaggtttctcaaa
gatgcctttgatccgggtgttgagagtataattctagacggcgagatgatcacctgggac
ccagtgacaagatccatggttggcttcggaacgctcaaaaccgcagctatatctgagcag
cggaatccttacggagaaacaggacatcgacctttgtttcgcatctttgactgcctttac
atcaacgacaaagacattacaggcttcatgttacaagataggcgcgaggctctagaacgt
gttgtcaagaacgttgatatgcgcctagagattcacaagtaccaagtggcagcgactgca
gcagaagtcgagactgaacttcgcaaggttattgaggaggcatctgaaggacttgtgttg
aagaacccacgatctgtgtaccgcctaaacagccgtaatgacgactggatgaaggtcaag
cctgaatatatgactgaattcggagagtccctggattgtgttgtgattggaggatactat
ggttccgggcatagaggtgggatgctgtcctcgtttttgtgcggcctccgcgtggacgat
aatgccatcaaggcaggtgctgatccaatgaagtgcttatctttcttcaaagttggtggc
ggtttccgagctgaggactacgccaaagtccatcacaagactgagggcaaatggcgtaaa
tgggacaggaacaaccctccgcgagatctcattgtccttggaggcaacgataatcagcaa
ttcgagcgacctgatgagtggatcaagccatgtgactctgttgttctggaagtcaaggca
gcatctgttgcggcgtcggatcattatggataccaatacagtttgcgattccctcgattc
aagaagctaagggatgataagagctggaaagaagcgctttcgacttacgaatttgtggag
ctgaagagccgtgttgaggaagaatctaagaacaaggcactaaagatcgataccagtagg
agagcctcgaaacgtttgaagaaggaagtgttgatcgctggcaataatacaaaaataagg
acgccttacgcaggacctcaaaccaaagctttcgaaggtttaagtttttgggtcatgact
ggcaaggaagatcagccgaaaaagaccaaggcagagatggagcagatcatcaagagcaat
ggcgggaaaatcgtccagagttcaactgcaacggatagtgtcatttgcatcggcgacaaa
agagtggtcaaggtcgcaagtcttatcaaaagtggagaaacgaacattgtaaagcctgct
tgggttcttgatgccttgaagcaagttgagattgatggcgctgagagacaacggtttctc
ataccttcggagccggcgcatatgtaccatatgctggaggaggtgcgcgaacacatagaa
ggagctgttgatgattatggcgacagctatgcgagagacgttaacgtcgacgacctcaga
cgccttatggaagacatgatacaccctaaggactcagaattctcagcaacagaattcctc
tcggagctcgaagagcgcggaaaaggctttggagaggtcccaggttccatgttcaggaga
tgtgttgctcgttttgtacctgcgaacgatgagacatctggcattgatttggagattgcc
aagaaccaatttctgtttgctggtggtaccatcgcgggagatgatgaggacgacagcatt
actcattacattgttacgagcacggattcaaagcttgtgagggatttacgaaaaagtatt
tcacgtggaagtttgaggatacctagaattgtcagtttgagctggctgagtgatagttgg
aaggagaaaactgttctagacgaagagcagtacgccatcgttgtttga
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