Pseudoxanthomonas spadix: DSC_13205
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Entry
DSC_13205 CDS
T01643
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSC_13205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psd03019
]
DSC_13205
03400 DNA repair and recombination proteins [BR:
psd03400
]
DSC_13205
Enzymes [BR:
psd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSC_13205
Messenger RNA biogenesis [BR:
psd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSC_13205
DNA repair and recombination proteins [BR:
psd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DSC_13205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AER57285
UniProt:
G7USN4
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All DBs
Position
2669925..2671709
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AA seq
594 aa
AA seq
DB search
MEILHRVFGHPGFRGEQAAIVEHVASGHDALVLMPTGGGKSLCYQVPALLREGTAIVVSP
LIALMQDQVEALRQLGVRAEFLNSSLESGEAARVERELLAGQIDLLYVAPERLLTPRLLS
LLDRARIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPNIPRIALTATADPPTQAEIA
ERLQLQGARRFVSSFDRPNIRYTVVQKDNGRRQLQDFLQDHKGSAGIVYCMSRRKVEQTA
QFLCEKGFNALPYHAGLDAQVRASNQRRFLREDGIVMCATIAFGMGIDKPDVRFVAHTDL
PKSLEGYYQETGRAGRDGEPAQAWLAYGLGDVVLLKQMIEQGEASEERKRLERRKLDQLL
GYCESMQCRRQVLLAGFGENYPKPCGNCDNCLTPAASWDATDAARKALSCVYRSGQRFGA
AHLIDVLRGADTERIRQLGHDKLSTYGIGADLDAAMWRGVFRQLVAASVLEVDAEGYGGL
RLTASAKPILQGQQTVMLRKDSPRLRQRERGGSPAAAEVAELDLPLFQALRQLRAQLAKE
QNVPAYVIFHDATLRNIAQQRPADLRALARVGGVGGSKLERYGPALLDVVRQAG
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
ttggaaatcctgcaccgggtctttggacacccgggttttcgcggtgaacaggccgccatc
gtcgagcatgtcgccagcggccacgacgccctggtgctgatgcccaccggcggcggcaag
tcgctgtgctaccaggtcccggcgctgctgcgcgaaggcaccgcgatcgtggtctcgccg
ctgatcgcgctgatgcaggaccaggtcgaggcgctgcgccagctcggcgtgcgcgccgaa
ttcctcaactcctcgctcgaatcgggggaggcggcgcgggtggagcgcgaactgctggcc
gggcagatcgacctgctctacgtggcgcccgagcgcctgctcacgccgcgcttgctgtcg
ctgctggaccgcgcccggatcgccctgttcgccatcgacgaggcgcactgcgtgtcgcag
tggggccacgacttccgccccgaataccgccagctgaccgtgctgcacgagcgctggccc
aacatcccgcgcatcgccctgaccgccaccgccgatccgccgacccaggccgagatcgcc
gaacgcctgcagctgcagggcgcgcgccgcttcgtcagttccttcgaccggcccaacatc
cgctacaccgtggtccagaaggacaacggccgccgccagctgcaggacttcctgcaggac
cacaagggttcggccggcatcgtctactgcatgtcgcgcaggaaggtcgagcagaccgcc
cagttcctgtgcgagaagggcttcaatgccctgccctatcacgccggcctggacgcgcag
gtgcgggccagcaaccagcgccggttcctgcgcgaggacggcatcgtcatgtgcgccacg
atcgccttcggcatgggcatcgacaagccggacgtgcgcttcgtggcccataccgacctg
cccaagtcgctggagggctactaccaggaaaccggccgcgccggccgcgatggcgaaccc
gcgcaggcctggctggcctacggcctgggcgatgtggtcctgctcaagcagatgatcgaa
cagggcgaggcgtccgaggagcgcaagcgcctggaacggcgcaagctcgaccagctgctg
ggctactgcgaatcgatgcaatgccggcgccaggtgctgctggccgggttcggcgagaac
tatccaaagccgtgcggcaactgcgacaactgcctgactccagcggccagctgggatgcg
accgatgcggcgcgcaaggcgctcagctgcgtctatcgcagcggccagcgtttcggtgcc
gcgcacctgatcgatgtgctgcgcggcgccgacaccgagcgcatccgccagctcggccac
gacaagctctccacctacggcatcggcgcggacctggacgcggcgatgtggcgcggcgtg
ttccgccagctggtcgccgccagcgtgctggaggtcgatgccgaaggctacggcggcctg
cgcctgaccgcttcagccaagccgatcctgcagggccagcagacggtcatgctgcgcaag
gattcgccccggctgcgccagcgcgaacgtggcggcagcccggccgcggcggaagtggcc
gagctcgacctgccgctgttccaggccctgcgccagctgcgcgcacaactggccaaggaa
cagaacgtgccggcctacgtgatcttccacgatgccaccctgcgcaacatcgcccagcag
cgcccggccgacctgcgcgccctggccagggtcggcggcgtcggcggcagcaagctggag
cgctacggcccggcgctgctggacgtggtccgccaggcgggttga
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